Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5484 158 2e-34 seq6490 145 1e-30 seq216 87.8 3e-13 >seq5484 Length=3241 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||| || || || ||||| || || |||||||| ||||| Sbjct 2856 GCGAAGCGTCATCGCAAAGTTCTGCGTGACAATATCCAGGGTATAACCAAGCCGGCTATT 2797 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| |||| ||| | | || || |||| Sbjct 2796 CGACGTTTGGCACGACGTGGTGGCGTGAAACGTATCTCGGGACTAATTTACGAGGAGACG 2737 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | || | || || ||| || || | ||||||| | ||| || Sbjct 2736 CGTGGCGTGCTAAAAGTGTTTCTGGAGAATGTCATACGTGATGCTGTTACGTATTGTGAA 2677 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||||||||| | ||||| |||||||||| ||||||||||| || Sbjct 2676 CACGCAAAACGGAAGACTGTCACGGCGATGGACGTCGTCTATGCTTTGAAACGTCAGGGA 2617 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||||||||| Sbjct 2616 CGTACATTGTATGGTTTTGG 2597 >seq6490 Length=2490 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || ||||| ||||||||||| || ||||| || || Sbjct 1985 GCGAAACGTCATCGGAAAGTGTTACGTGATAATATCCAAGGAATTACAAAGCCGGCAATT 1926 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || | || |||||||||||||| || ||| | || || || | |||||||| | Sbjct 1925 CGACGATTAGCACGTCGTGGTGGAGTGAAACGTATTTCGGGTCTGATATATGAAGAAACA 1866 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||||| | | || || | |||||| | ||| ||| Sbjct 1865 CGTGGAGTATTGAAGGTATTCCTTGAAAATGTGATACGTGATGCGGTAACATATTGCGAA 1806 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||| || || || | |||||| | || |||||||||||||||||||| Sbjct 1805 CATGCAAAACGTAAAACAGTTACTGCTATGGATGTAGTTTATGCATTGAAACGTCAAGGT 1746 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 1745 CGGACACTTTATGGATTTGG 1726 >seq216 Length=49901 Score = 87.8 bits (96), Expect = 3e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 17135 GCTAAGCGTCATCGCAAAGTTCTACGTGATAATATTCAAGGCATAACGAAACCGGCTATT 17194 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| |||| || |||||||| || ||||| | || || | | |||||||| Sbjct 17195 CGTCGTTTGGCACGCCGTGGTGGCGTGAAGCGAATTTCAGGTCTAATTTATGAAGA 17250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056691683399