Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5484 158 2e-34
seq6490 145 1e-30
seq216 87.8 3e-13
>seq5484
Length=3241
Score = 158 bits (174), Expect = 2e-34
Identities = 191/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||||| | ||| || || || ||||| || || |||||||| |||||
Sbjct 2856 GCGAAGCGTCATCGCAAAGTTCTGCGTGACAATATCCAGGGTATAACCAAGCCGGCTATT 2797
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||| || |||||||| || || ||| |||| ||| | | || || ||||
Sbjct 2796 CGACGTTTGGCACGACGTGGTGGCGTGAAACGTATCTCGGGACTAATTTACGAGGAGACG 2737
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | || | || || ||| || || | ||||||| | ||| ||
Sbjct 2736 CGTGGCGTGCTAAAAGTGTTTCTGGAGAATGTCATACGTGATGCTGTTACGTATTGTGAA 2677
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||||| ||||||||||| | ||||| |||||||||| ||||||||||| ||
Sbjct 2676 CACGCAAAACGGAAGACTGTCACGGCGATGGACGTCGTCTATGCTTTGAAACGTCAGGGA 2617
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| | |||||||||||
Sbjct 2616 CGTACATTGTATGGTTTTGG 2597
>seq6490
Length=2490
Score = 145 bits (160), Expect = 1e-30
Identities = 188/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || ||||| ||||||||||| || ||||| || ||
Sbjct 1985 GCGAAACGTCATCGGAAAGTGTTACGTGATAATATCCAAGGAATTACAAAGCCGGCAATT 1926
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || | || |||||||||||||| || ||| | || || || | |||||||| |
Sbjct 1925 CGACGATTAGCACGTCGTGGTGGAGTGAAACGTATTTCGGGTCTGATATATGAAGAAACA 1866
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || |||||| | ||||| | | || || | |||||| | ||| |||
Sbjct 1865 CGTGGAGTATTGAAGGTATTCCTTGAAAATGTGATACGTGATGCGGTAACATATTGCGAA 1806
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||| || || || | |||||| | || ||||||||||||||||||||
Sbjct 1805 CATGCAAAACGTAAAACAGTTACTGCTATGGATGTAGTTTATGCATTGAAACGTCAAGGT 1746
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||||| |||||
Sbjct 1745 CGGACACTTTATGGATTTGG 1726
>seq216
Length=49901
Score = 87.8 bits (96), Expect = 3e-13
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||||||| | ||| || ||||| || ||||| || || || || |||||
Sbjct 17135 GCTAAGCGTCATCGCAAAGTTCTACGTGATAATATTCAAGGCATAACGAAACCGGCTATT 17194
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548
|||||| |||| || |||||||| || ||||| | || || | | ||||||||
Sbjct 17195 CGTCGTTTGGCACGCCGTGGTGGCGTGAAGCGAATTTCAGGTCTAATTTATGAAGA 17250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79056691683399
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |