Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8094 102 5e-17 seq9110 98.7 7e-16 seq6 89.7 3e-13 seq5408 84.2 1e-11 seq3612 84.2 1e-11 >seq8094 Length=1710 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||| || ||||| || ||||| || || |||| ||| |||| || Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||||||||| || | || |||||||| | || | ||| || || ||| Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || || || | || ||||| | || ||||| || || || |||||| Sbjct 1079 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 1138 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||||||||| || ||||| Sbjct 1139 CCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 >seq9110 Length=1366 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||| || || ||||||||||| ||||| |||| ||| |||| || Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || |||||||||||||| ||||| ||||| ||||| | || | ||| || ||||| Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || || |||| || |||||| ||| || || | || || ||||| Sbjct 311 ATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTG 252 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || ||||| |||||||| Sbjct 251 CCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq6 Length=144253 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| | | ||||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct 112501 TTCTCTTTTTCCAAAGTTCTTTATAACTTTCCCTCACAGTACTTGTTTGCTATCGGTCTC 112560 Query 20005 GCGGTAATATTTAGCCTTA 20023 | ||| |||||| |||| Sbjct 112561 GTGGTCGAATTTAGACTTA 112579 >seq5408 Length=3313 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||||| || ||| ||||| ||||||||||||| Sbjct 50 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTTAC-GTATTTGTTTGCTATCGGTCTCGT 108 Query 20007 GGT 20009 ||| Sbjct 109 GGT 111 >seq3612 Length=5795 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||| || || | |||| ||| || || ||| |||||| Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||||| | |||||| ||| || || | ||||| || || || ||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 || |||||||||||||| ||||| || Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334864564652933