Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 102 5e-17
seq9110 98.7 7e-16
seq6 89.7 3e-13
seq5408 84.2 1e-11
seq3612 84.2 1e-11
>seq8094
Length=1710
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||| || ||||| || ||||| || || |||| ||| |||| ||
Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
||||||||||||||||| || | || |||||||| | || | ||| || || |||
Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || || || | || ||||| | || ||||| || || || ||||||
Sbjct 1079 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 1138
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||||||||| || |||||
Sbjct 1139 CCCGTTAAAGTTTTCACGAAAATTTGCAT 1167
>seq9110
Length=1366
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||| || || ||||||||||| ||||| |||| ||| |||| ||
Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
|| |||||||||||||| ||||| ||||| ||||| | || | ||| || |||||
Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || || |||| || |||||| ||| || || | || || |||||
Sbjct 311 ATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTG 252
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || | || || ||||| ||||||||
Sbjct 251 CCAGTAAGTGTCTTTACGAAAATCTGCAT 223
>seq6
Length=144253
Score = 89.7 bits (98), Expect = 3e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||| | | ||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 112501 TTCTCTTTTTCCAAAGTTCTTTATAACTTTCCCTCACAGTACTTGTTTGCTATCGGTCTC 112560
Query 20005 GCGGTAATATTTAGCCTTA 20023
| ||| |||||| ||||
Sbjct 112561 GTGGTCGAATTTAGACTTA 112579
>seq5408
Length=3313
Score = 84.2 bits (92), Expect = 1e-11
Identities = 57/63 (90%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||||| || ||| ||||| |||||||||||||
Sbjct 50 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTTAC-GTATTTGTTTGCTATCGGTCTCGT 108
Query 20007 GGT 20009
|||
Sbjct 109 GGT 111
>seq3612
Length=5795
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||| || || | |||| ||| || || ||| ||||||
Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||||| | |||||| ||| || || | ||||| || || || |||
Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
|| |||||||||||||| ||||| ||
Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334864564652933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |