Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 113 4e-20
seq3612 84.2 2e-11
>seq9110
Length=1366
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || |||||||| | || || ||| |||| || | || || || | |||
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||||||| | | ||||||| | || ||||| || || |||||||| || ||
Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAA-GACAAGGAGGGCATTCCACCGGATCA 341
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || |||||||| ||||| || || || | ||| || || ||||| ||
Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||||||||||||| ||||| ||
Sbjct 402 TATTCAAAAAGAATCGACGCTTCA 425
>seq3612
Length=5795
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||||||||| || || || ||||| || || | || || | || || || |||||
Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||| ||||| ||| ||||| | |||| ||| || || || || || ||||||||||
Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAG-GATAAGGAGGGCATCCCACCTGACC 1387
Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141
| || || |||||||||| || ||
Sbjct 1386 AGCAACGACTTATTTTTGCAGGTAA 1362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433221092972045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |