Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9110 113 4e-20 seq3612 84.2 2e-11 >seq9110 Length=1366 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| | || || ||| |||| || | || || || | ||| Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||||||| | | ||||||| | || ||||| || || |||||||| || || Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAA-GACAAGGAGGGCATTCCACCGGATCA 341 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| ||||| || || || | ||| || || ||||| || Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||| ||||| || Sbjct 402 TATTCAAAAAGAATCGACGCTTCA 425 >seq3612 Length=5795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || || || ||||| || || | || || | || || || ||||| Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| ||||| | |||| ||| || || || || || |||||||||| Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAG-GATAAGGAGGGCATCCCACCTGACC 1387 Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141 | || || |||||||||| || || Sbjct 1386 AGCAACGACTTATTTTTGCAGGTAA 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433221092972045