Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq187 87.8 2e-12 >seq187 Length=54303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 ||||| || ||||||||||| |||||| || || ||||| | |||||| || || ||| Sbjct 43126 ACTTCATCAACAGTCCAAAATGATGCTAAGGCCTTCTTGTAAAAATCCCAAATATCATGA 43067 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 ||| ||| |||||||| ||||||||||| || || || Sbjct 43066 AATTTAATAGGAAATATAACAAAACGATTTGGATTTTC 43029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| ||| ||||||||||| || || ||||| || | || || || || | Sbjct 44269 CTTCATCTCTTGAAATCAACTCATTACTATGCGTCAAACCAGGCATCAAACCGCGCTTTT 44210 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | ||||||||||||||||||||| || || |||||||| ||| Sbjct 44209 TCAACCAAAATATTGAAGCAAAACTTCCGGAGAAAAATATCCCT 44166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556719893335320