Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 125 6e-24
seq8094 116 3e-21
seq10810 102 7e-17
seq18801 89.7 4e-13
>seq9110
Length=1366
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || ||||| | || || || || ||| || |
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | ||| ||| || |||||||||||||| |||||||| |||||
Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || |||||||| |||||||| ||||| || || | || ||||| ||
Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 402
Query 22399 ATTCAAAAAGAATCCAC 22415
|||||||||||||| ||
Sbjct 403 ATTCAAAAAGAATCGAC 419
>seq8094
Length=1710
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || ||||||||||| |||||||| | || | |||||||| | |
Sbjct 1167 ATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 1108
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | ||| ||| || || || |||||||| |||||||| ||||||
Sbjct 1107 GATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 1048
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || |||||||| ||||| || ||||| || || | || || || ||
Sbjct 1047 CAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAAT 988
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 987 ATCCAGAAGGAATCGAC 971
>seq10810
Length=964
Score = 102 bits (112), Expect = 7e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || ||||| || || || ||||| ||||| ||| ||||||||||||| |
Sbjct 939 AAATATGCAGATCTTTGTAAAGACATTGACCGGAAAAACAATCATTCTTGAAGTGGAAGC 880
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || || || || | ||| |||||| || || |||||||||||||| || ||
Sbjct 879 GTCAGACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGA 820
Query 22335 TCAACAACGTCTTATATTTGCCGG 22358
|||||||| || | ||||| ||
Sbjct 819 ACAACAACGCCTAGTTTTTGCTGG 796
>seq18801
Length=524
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281
||||||||||| |||||| | || ||||||||| |||| | ||| ||||| | | |||
Sbjct 410 CAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 351
Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341
||| | | || | ||| ||||| || ||||| ||||| |||||||| ||||||||
Sbjct 350 ACCATCAAGAATGTTAAAGCGAAAATGCAGGACAAAGAGGGAATTCCACCAGATCAACAG 291
Query 22342 CG 22343
||
Sbjct 290 CG 289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419624448249295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |