Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 179 7e-40
seq8094 145 1e-29
seq11838 93.3 8e-14
seq7011 86.0 1e-11
seq1660 86.0 1e-11
>seq9110
Length=1366
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | |||| ||| ||||| || |||||||| || |||||||| ||
Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || ||||| || ||||| || || |||| ||| || || ||||||
Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| |||||||| || ||| |||||| || || | | ||||||
Sbjct 329 ATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACC 270
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| || |||||||| || || || ||||| ||||| ||||||||
Sbjct 269 TCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
Score = 84.2 bits (92), Expect = 4e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || ||||| || |||||||||||||| ||
Sbjct 221 CCACCACGAAGTCGGAGTACCAAATGCAATGTCGACTCCTTCTGGATGTTATAATCAGAT 162
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | |||||||||||||||||| ||
Sbjct 161 AGTGTTCGCCCATCTTCTAACTGCTTACC 133
>seq8094
Length=1710
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | |||| ||| ||||| || || || ||||| ||||| || ||
Sbjct 941 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 1000
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || || || || ||||| || || | || ||||| || ||||||
Sbjct 1001 AGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 1060
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || |||||||| || ||| |||||||| || | | || |||
Sbjct 1061 ATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACT 1120
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || |||||||| ||||| | || || ||||| || ||||||
Sbjct 1121 TCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || ||||| | || || || || |||||||| || || || ||||| || ||
Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| || || | | |||||||||||| || || ||||| || || ||
Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| ||||| ||||||||
Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514
Score = 84.2 bits (92), Expect = 4e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || ||||| ||||||||||||||||| ||
Sbjct 1516 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 1575
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | |||||||||||| ||||| ||
Sbjct 1576 AGTGTTCGCCCATCTTCTAATTGCTTACC 1604
>seq11838
Length=813
Score = 93.3 bits (102), Expect = 8e-14
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | |||||| || ||||||||||||||||| ||
Sbjct 703 CCACCACGAAGTCGGAGTACCAAATGCAACGTGGATTCCTTTTGGATGTTATAATCAGAT 762
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | |||||||||||||||||| ||
Sbjct 763 AGTGTTCGCCCATCTTCTAACTGCTTACC 791
>seq7011
Length=2193
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 1649 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1590
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 1589 CCCGCATCGGGC 1578
>seq1660
Length=13195
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 1677 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1618
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 1617 CCCGCATCGGGC 1606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921389194971960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |