Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9110 179 7e-40 seq8094 145 1e-29 seq11838 93.3 8e-14 seq7011 86.0 1e-11 seq1660 86.0 1e-11 >seq9110 Length=1366 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||| ||| ||||| || |||||||| || |||||||| || Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || ||||| || ||||| || || |||| ||| || || |||||| Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| |||||||| || ||| |||||| || || | | |||||| Sbjct 329 ATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACC 270 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 269 TCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || ||||| || |||||||||||||| || Sbjct 221 CCACCACGAAGTCGGAGTACCAAATGCAATGTCGACTCCTTCTGGATGTTATAATCAGAT 162 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | |||||||||||||||||| || Sbjct 161 AGTGTTCGCCCATCTTCTAACTGCTTACC 133 >seq8094 Length=1710 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||| ||| ||||| || || || ||||| ||||| || || Sbjct 941 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 1000 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || || || || ||||| || || | || ||||| || |||||| Sbjct 1001 AGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 1060 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || |||||||| || ||| |||||||| || | | || ||| Sbjct 1061 ATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACT 1120 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || |||||||| ||||| | || || ||||| || |||||| Sbjct 1121 TCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||| | || || || || |||||||| || || || ||||| || || Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| || || | | |||||||||||| || || ||||| || || || Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || ||||| ||||||||||||||||| || Sbjct 1516 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 1575 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | |||||||||||| ||||| || Sbjct 1576 AGTGTTCGCCCATCTTCTAATTGCTTACC 1604 >seq11838 Length=813 Score = 93.3 bits (102), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | |||||| || ||||||||||||||||| || Sbjct 703 CCACCACGAAGTCGGAGTACCAAATGCAACGTGGATTCCTTTTGGATGTTATAATCAGAT 762 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | |||||||||||||||||| || Sbjct 763 AGTGTTCGCCCATCTTCTAACTGCTTACC 791 >seq7011 Length=2193 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1649 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1590 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1589 CCCGCATCGGGC 1578 >seq1660 Length=13195 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1677 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1618 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1617 CCCGCATCGGGC 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921389194971960