Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9110 104 2e-17 seq8094 91.5 1e-13 >seq9110 Length=1366 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 114152 AATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| ||||| || || | | ||| | || | ||| |||||||||||||| || |||| Sbjct 454 AATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAAT 395 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | || |||||| || || | ||||| || || |||| || || || || |||| Sbjct 394 CCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCG 335 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | |||||||| || ||||| |||||| ||| | | || | || || | || || Sbjct 334 GTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTT 275 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| || | |||||||| || || || ||||| ||||||||||| Sbjct 274 CTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| || | ||||||||||| || || ||||||||||| ||||| || ||| || Sbjct 1373 TACCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGG 1432 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | || | || || | || ||| || |||| || | ||||||||| |||| Sbjct 1433 CTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCA 1492 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 | || ||||| |||||||||||| Sbjct 1493 GTGTCTTTACGAAAATCTGCATG 1515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420030747985716