Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9110 96.9 4e-15 seq894 89.7 6e-13 seq3095 86.0 7e-12 seq3092 82.4 8e-11 >seq9110 Length=1366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||| | ||| || || |||| || | ||| || || || || Sbjct 413 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 354 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || ||||| ||||| || | ||| | || ||||||||| ||| ||| ||| | || Sbjct 353 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTC 294 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || | ||| || || | ||| ||||||||||| || || |||||||| Sbjct 293 TCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACG 234 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 233 AAAATCTGCAT 223 >seq894 Length=21765 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||||| | ||||||||||| |||| Sbjct 12573 AAAAACCTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 12632 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||| Sbjct 12633 TCACCACTATACTACCGAGGAT 12654 >seq3095 Length=7004 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 890 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 949 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 950 TACTACCGAGGA 961 >seq3092 Length=7011 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4120 CTCCCCGACCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4179 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 4180 TACTACCGAGGAT 4192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543075346791120