Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 129 6e-25
seq8094 104 2e-17
seq3027 102 8e-17
>seq9110
Length=1366
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||| | | ||| || || |||| |||||||||||||||||| || ||||| |
Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || | ||| || |||||| | || || || ||||| || || |||
Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || ||| |||||| | ||| | |||||| ||| || ||
Sbjct 329 ATGCCCTCCTTGTCTTGGATCTTT-GCTTTAACGTTCTCGATAGTATCAGAGGCTTCTAC 271
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | |||| ||| ||||| || | || ||||||||||| |||||
Sbjct 270 CTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
>seq8094
Length=1710
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||| | | ||| || || |||| ||||||||| || || || || || || |
Sbjct 941 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 1000
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || | || || |||||| | || | ||||| || || || |||
Sbjct 1001 AGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 1060
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || ||| |||||| | || | ||||| || |||||
Sbjct 1061 ATGCCCTCCTTATCCTGGATCTTT-GCTTTAACGTTTTCGATGGTATCCGAAGCCTCCAC 1119
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | |||| ||| || || || |||||||| |||||||||||||||
Sbjct 1120 TTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| ||||||| |||||||| || |||||||| || ||||| || || |||||
Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||| ||| || ||||| | |||| || ||||| ||||
Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494
Query 64424 GTTTTTACGAAAATTTGCAT 64443
|| ||||||||||| |||||
Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514
>seq3027
Length=7170
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 64308 CATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367
|| |||| || | |||||| || | |||||||||||||||||||| || | | |||||
Sbjct 5954 CAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTA 5895
Query 64368 CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427
||| || | ||||||| | || ||||||| ||| | || ||||| |||| ||||
Sbjct 5894 CAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTT 5835
Query 64428 TTACGAAAATTTGCAT 64443
|||| |||||||||||
Sbjct 5834 TTACAAAAATTTGCAT 5819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499518371128920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |