Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9110 129 6e-25 seq8094 104 2e-17 seq3027 102 8e-17 >seq9110 Length=1366 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||| || || |||| |||||||||||||||||| || ||||| | Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | ||| || |||||| | || || || ||||| || || ||| Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || ||| |||||| | ||| | |||||| ||| || || Sbjct 329 ATGCCCTCCTTGTCTTGGATCTTT-GCTTTAACGTTCTCGATAGTATCAGAGGCTTCTAC 271 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| ||| ||||| || | || ||||||||||| ||||| Sbjct 270 CTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||| || || |||| ||||||||| || || || || || || | Sbjct 941 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 1000 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | || || |||||| | || | ||||| || || || ||| Sbjct 1001 AGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 1060 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || ||| |||||| | || | ||||| || ||||| Sbjct 1061 ATGCCCTCCTTATCCTGGATCTTT-GCTTTAACGTTTTCGATGGTATCCGAAGCCTCCAC 1119 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | |||| ||| || || || |||||||| ||||||||||||||| Sbjct 1120 TTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| ||||||| |||||||| || |||||||| || ||||| || || ||||| Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||| ||| || ||||| | |||| || ||||| |||| Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494 Query 64424 GTTTTTACGAAAATTTGCAT 64443 || ||||||||||| ||||| Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514 >seq3027 Length=7170 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64308 CATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367 || |||| || | |||||| || | |||||||||||||||||||| || | | ||||| Sbjct 5954 CAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTA 5895 Query 64368 CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427 ||| || | ||||||| | || ||||||| ||| | || ||||| |||| |||| Sbjct 5894 CAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTT 5835 Query 64428 TTACGAAAATTTGCAT 64443 |||| ||||||||||| Sbjct 5834 TTACAAAAATTTGCAT 5819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499518371128920