Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8094 89.7 4e-13 seq3027 82.4 5e-11 >seq8094 Length=1710 Score = 89.7 bits (98), Expect = 4e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 |||| || |||||||| || || | ||||| |||||||| || |||||| || |||| Sbjct 1011 CGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCT 1070 Query 15080 TGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTA 15138 | || || |||||||| || |||| || ||||| | || || || || || Sbjct 1071 TATCCTGGATCTTTGCTTTA-ACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTT 1129 Query 15139 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| || | |||||| || ||||||||||| Sbjct 1130 ATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 >seq3027 Length=7170 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||| || || ||| || ||||||||||| || ||||| | |||| Sbjct 5928 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 5869 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || ||||| || ||| |||||||||||||||||||| Sbjct 5868 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 5819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357303827261255