Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 89.7 4e-13
seq3027 82.4 5e-11
>seq8094
Length=1710
Score = 89.7 bits (98), Expect = 4e-13
Identities = 116/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079
|||| || |||||||| || || | ||||| |||||||| || |||||| || ||||
Sbjct 1011 CGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCT 1070
Query 15080 TGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTA 15138
| || || |||||||| || |||| || ||||| | || || || || ||
Sbjct 1071 TATCCTGGATCTTTGCTTTA-ACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTT 1129
Query 15139 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||||||| || | |||||| || |||||||||||
Sbjct 1130 ATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167
>seq3027
Length=7170
Score = 82.4 bits (90), Expect = 5e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||||||||||| || || ||| || ||||||||||| || ||||| | ||||
Sbjct 5928 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 5869
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || ||||| || ||| ||||||||||||||||||||
Sbjct 5868 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 5819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357303827261255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |