Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8094 111 1e-19 seq9110 105 6e-18 >seq8094 Length=1710 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||| || | ||| || || || || ||||| || || | Sbjct 941 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 1000 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || | |||||||| || ||||||||||||| ||||| || || Sbjct 1001 AGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 1060 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||| ||| ||| || ||||| | ||| ||||| ||| |||| | ||| | Sbjct 1061 ATGCCCTCCTTATCCTGGATCTT-TGCTTTAACGTT-TTCGATGGTATCCGAAGCCTCCA 1118 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || | |||||| || ||||| ||||| Sbjct 1119 CTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 >seq9110 Length=1366 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||| || | ||| || |||||||||||||| ||||| | Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || | ||||||||| || |||| | ||| |||||||| || || Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| ||| || ||||| | ||| |||| || || | || | Sbjct 329 ATGCCCTCCTTGTCTTGGATCTT-TGCTTTAACGTT-CTCGATAGTATCAGAGGCTTCTA 272 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | |||||||| || || || ||||| ||||||||||| Sbjct 271 CCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475380480466320