Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq9110 96.9 2e-15 seq8094 93.3 3e-14 >seq9110 Length=1366 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || |||||| || | ||| || |||| || | || ||||||||| ||||||||||| Sbjct 453 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 394 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | || || | || ||||| ||||| ||| |||| |||| || |||||||||| Sbjct 393 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 334 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||| || ||||| || ||| ||||| || | | || || | | ||| Sbjct 333 TGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTC 274 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| || || ||||| || || | || |||||||| |||||||| Sbjct 273 TACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || |||||| || | ||| || |||| || | || ||| || || |||||||| || Sbjct 937 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTC 996 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | || || | || ||||||||||| ||| |||| || || ||||| ||||| | Sbjct 997 CGACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGG 1056 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||| || || || || ||| ||||| | | | || || | || Sbjct 1057 TGGAATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTC 1116 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||| || || |||||||||||||||||||| ||||| || ||||| Sbjct 1117 CACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347283899903219