Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq33 181 4e-40 seq229 159 1e-33 seq9110 111 6e-19 seq8094 91.5 6e-13 seq2546 91.5 6e-13 seq18801 84.2 9e-11 >seq33 Length=98161 Score = 181 bits (200), Expect = 4e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || |||||||| |||| |||||||||||||| |||||| | |||| Sbjct 78321 TACAAGGGCGAGACGAAAACTTTCACTCCAGAAGAAATTTCATCAATGGTTTTGGTTAAA 78262 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || ||| || | ||||| | |||| | ||||| || || || || Sbjct 78261 ATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTATCACAGTC 78202 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || ||||||||||| |||| || ||||||||||||||| | || || |||||| Sbjct 78201 CCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCGCTGGT 78142 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| || |||||||| |||||||| |||||||| ||| | || ||||| Sbjct 78141 CTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 78089 Score = 136 bits (150), Expect = 2e-26 Identities = 195/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 |||| || | ||||| |||||||| ||||| |||||||||| | || |||| Sbjct 81916 TTCAGGTTTACGAAGGTGAACGTGCGATGACGAGAGATAATAACTTGTTGGGTAAATTCG 81857 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 ||||| ||||| ||| || | || ||| ||||| ||| | || | |||| Sbjct 81856 AACTTTCTGGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATA 81797 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399 | |||||||| |||||||| ||||| ||| || ||||| |||| || || || Sbjct 81796 TCGATGCAAACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAG-CATAAT 81738 Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || ||||||||||||||||||||| ||||| || || || || || |||| |||||| Sbjct 81737 AAGATTACAATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTT 81678 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| ||||| | ||||| ||||||||| Sbjct 81677 GCGGAAGCCGAAAAGTACAAGGCTGATGATGA 81646 Score = 122 bits (134), Expect = 3e-22 Identities = 193/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 452219 ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTT 452278 ||||| || | |||||| |||||||| ||||| ||| |||||| || || |||| Sbjct 76784 ATTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTC 76725 Query 452279 ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGAT 452338 | || ||||| ||| || | || || ||||||||| | || | ||| Sbjct 76724 GAATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGAT 76665 Query 452339 GTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA 452398 |||| || ||||||||| | ||||| ||| || |||||| | |||||| ||||| Sbjct 76664 ATTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAA 76606 Query 452399 AAA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGT 452457 || ||||||||||| ||||| ||| ||||| || || || || ||||| |||||| Sbjct 76605 CAAGATTACAATTACCAATGACAAAGGACGTTTGTCAAAGGATGAGATTGAGCGAATGGT 76546 Query 452458 AGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 | | ||||| || |||| |||| ||||||||| Sbjct 76545 ACAGGAAGCTGAGAAATATAAGGCGGATGATGAA 76512 Score = 111 bits (122), Expect = 6e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| ||| | ||||| || || |||||||||||| | ||||| |||||||| |||||| Sbjct 83520 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 83461 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||| |||| | ||||| |||||||| || || || || || || |||||| Sbjct 83460 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 83401 Query 451439 CTAGCATATGGACTAG 451454 | |||||||| |||| Sbjct 83400 ATTGCATATGGTCTAG 83385 >seq229 Length=49082 Score = 159 bits (176), Expect = 1e-33 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || |||||||||||||||||| | |||||||| |||||||||||||| || Sbjct 12430 AAAACCTTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCG 12371 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| |||| ||| | ||||||| | || || || ||||| || ||| Sbjct 12370 GAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAAT 12311 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| || | |||||| | || Sbjct 12310 GATGCACAACGTCAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGT 12251 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || |||||||| || ||||| ||| | || ||||| || Sbjct 12250 ATCATCAATGAACCAACTGCAGCCGCTATCGCTTATGGGCT 12210 Score = 91.5 bits (100), Expect = 6e-13 Identities = 164/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| ||||| || || | | || | ||| Sbjct 11159 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTAT------TTCG 11106 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| |||| || || ||| | ||| ||||||| | ||| | ||||||| || Sbjct 11105 GGTGAAGAAAGCACTGGTGACATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTATT 11046 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 ||||||| |||||| | ||||| || | ||| || |||| ||| ||| ||| | Sbjct 11045 GAAACAGTTGGTGGTGTAATGACCAAACTTATTCAA--AGGAACACTGTTATCCCTACCA 10988 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | || ||||| | || ||| ||| |||||| || ||| || || ||||| || Sbjct 10987 AGAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCAGGT 10930 Score = 87.8 bits (96), Expect = 7e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 451481 AATATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 |||||| | ||||||||| |||| || |||||| |||| || || | | ||||| Sbjct 11925 AATATTCTTGTATTTGATCTTGGCGGTGGAACTTTTGATGTGTCGATATTGACGATTGAT 11866 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 |||| || || |||||| || ||||| |||||||||||| | || ||||||||| || Sbjct 11865 AATGGTGTTTTCGAAGTACTAGCTACCAACGGTGATACTCATTTGGGTGGTGAAGATTTT 11806 Query 451601 GAT 451603 ||| Sbjct 11805 GAT 11803 >seq9110 Length=1366 Score = 111 bits (122), Expect = 6e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||| ||||| ||||| || || || || || ||| | ||| Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || ||||| ||| || ||||| ||||| || ||||| || ||||| Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| |||| || | || ||||| | || || || | || || ||||||||||| Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 402 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 403 ATTCAAAAAGAATCGACGCTTCAC 426 >seq8094 Length=1710 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||||||||| ||||| || || | || || ||| | || Sbjct 1514 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 1455 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| |||||||| ||||| || || |||||||||||||| Sbjct 1454 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAG 1395 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || ||| | ||||| |||| Sbjct 1394 CAGCGTCTCATTTTTGCAGG 1375 >seq2546 Length=8651 Score = 91.5 bits (100), Expect = 6e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||| |||||| || ||||| ||| |||| || || ||| |||| || | || || Sbjct 144 GTATATGATTTGGGCGGAGGTACTTTCGATATATCGGTTCTTGAAATTCAAAAAGGTGTT 85 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || ||||| ||| |||||||||||||||| || || ||||||||| ||||||||||| Sbjct 84 TTCGAAGTGAAGTCAACCAATGGTGATACATTCCTTGGTGGTGAAGATTTTGATAATGCA 25 >seq18801 Length=524 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||| || ||||| || ||||||||||| || || | || | ||| ||||||||| | Sbjct 407 ATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGATACC 348 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || | | ||||| ||||| || || || || |||||||| || |||||||| || Sbjct 347 ATCAAGAATGTTAAAGCGAAAATGCAGGACAAAGAGGGAATTCCACCAGATCAACAGCGC 288 Query 391176 TTAATTTTCTCAGG 391189 || || ||||| || Sbjct 287 TTGATCTTCTCCGG 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975205970884244