Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq33 192 4e-43 seq229 152 4e-31 seq741 89.7 4e-12 >seq33 Length=98161 Score = 192 bits (212), Expect = 4e-43 Identities = 266/370 (72%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| ||| || || ||||||||||| ||||||| || ||| Sbjct 78077 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 78136 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||| ||| || | ||||||||| ||||||| ||||| || || |||||| Sbjct 78137 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 78196 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || ||||| ||||| | ||| | | ||||| | | || ||||||| Sbjct 78197 GCTGGGACTGTGATAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 78256 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402 ||||||||| |||| |||||||||||||| ||||| | ||| || || | || Sbjct 78257 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAAGTT--TTCGTCTCGC 78314 Query 518403 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 518459 | ||| || | | | |||||| | |||| |||| | ||||| ||||||| Sbjct 78315 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 78374 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| |||||||||||| || || | |||| ||| | | |||||| |||||||| | Sbjct 78375 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 78434 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 78435 CATCTGAAAT 78444 Score = 120 bits (132), Expect = 2e-21 Identities = 180/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| ||||||| Sbjct 77252 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 77311 Query 517686 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | | Sbjct 77312 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 77370 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 ||||||| || | || || |||| ||||| || || | | | ||||| Sbjct 77371 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 77430 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | ||| |||||||| || || | |||| | | | |||| || |||||| Sbjct 77431 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCTTCG 77490 Query 517865 AACAAAGAATCAA 517877 ||||||||||||| Sbjct 77491 AACAAAGAATCAA 77503 Score = 118 bits (130), Expect = 8e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| |||||||| |||| ||||||||||||||| || || || |||| | ||| Sbjct 83378 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 83437 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| || |||||||| || ||||||| ||| ||||| || ||||| Sbjct 83438 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 83497 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || ||||| | |||||||| Sbjct 83498 GCTGGTACAGTTACTACGGCATC 83520 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 ||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || ||| Sbjct 78086 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 78145 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 || ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| || Sbjct 78146 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 78205 Query 322361 GTAATAACTGC 322371 || ||||| || Sbjct 78206 GTGATAACAGC 78216 Score = 104 bits (114), Expect = 2e-16 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||| |||||| |||||| | |||| |||||||||||| ||||| || Sbjct 78703 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCTGCATCACCAATAAGGC 78762 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 78763 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 78809 Score = 95.1 bits (104), Expect = 9e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || || Sbjct 76548 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 76607 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 ||| |||||||||||| || | ||||| | ||||||||| || || | ||| Sbjct 76608 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 76667 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||||||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 76668 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 76727 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 517398 | | || || |||||| ||||| || | |||||||| || Sbjct 76728 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 76772 >seq229 Length=49082 Score = 152 bits (168), Expect = 4e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || || Sbjct 12192 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 12251 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| || || ||||| | ||||||||||| |||||||| | ||||| ||| Sbjct 12252 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 12311 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || || | ||| |||| | |||||||| |||| ||| || Sbjct 12312 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 12371 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||| ||||||||||| | || ||| | |||||||| ||| || Sbjct 12372 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGG 12418 >seq741 Length=24610 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882 |||||| | || ||| ||||||||| | |||||||| || || ||||| |||| Sbjct 10415 AAGTCAATTAAACAACGTCTGAAAG--------GGAAAGAAGGCCGAATCAGAGGGAATT 10364 Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942 ||||||| ||||| || ||| | || || || || || || || | ||||| ||| | Sbjct 10363 TGATGGGCAAACGAGTGGATTTCTCAGCCCGAACTGTGATCACACCAGATCCAAATCTAC 10304 Query 668943 CTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTG 669002 || | || |||||| || |||| || |||||| |||| | || || ||||||| Sbjct 10303 CTATAGATACAGTTGGCGTACCTCGTACTATTGCCCAAAACATGACATTCCCAGAAATTG 10244 Query 669003 TAACA 669007 | ||| Sbjct 10243 TTACA 10239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779817875659558