Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq229 161 1e-34 seq33 136 5e-27 seq161 91.5 2e-13 >seq229 Length=49082 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| || || || |||||||| || || ||||||||||| || ||||| | | Sbjct 12201 TTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACA 12260 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| |||||||| | |||||||| || ||||| ||||| | ||| |||||||| Sbjct 12261 TTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAA 12320 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | |||| || || ||||| | |||||| || ||| Sbjct 12321 GCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCCGCAATTTCT 12380 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||||| |||||||||| |||||| ||||||| Sbjct 12381 TTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAG 12417 >seq33 Length=98161 Score = 136 bits (150), Expect = 5e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 ||||||| || ||||| |||| ||||||||||| || ||| |||| || | || || Sbjct 82348 CCTCATCTGGATTAATGCTTTTGTTCAGTTCTTTTCCAGAAAAGAAATCGGAGAGCAATT 82407 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 ||| | ||| || || || || || || || |||||||| || |||| || || | || Sbjct 82408 TTTGTACTTTTGGAATACGAGTAGAACCGCCAACCAAAACAATATCATGCATTTGAGCTT 82467 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 |||| ||||| | || || | || ||| || || || ||||| | ||||||||| | Sbjct 82468 TATCCATCTTAGCATCACGCAATGCTTTCTCAACGGGATCCATGGTTGAACGGAACAAAT 82527 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||| || || |||||||| || ||||| || || || || ||| |||||| Sbjct 82528 CAGCACAAAGCTCTTCAAAACGGGCTCGGGTGATACTAGTGTAAAAGTCAGTACCGTCGA 82587 Query 7296 ATAACGAATCAATTTCAATG 7315 | | ||||||||||||||| Sbjct 82588 AGAGTGAATCAATTTCAATG 82607 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 ||||| || ||||| |||||||||||||||| || || |||| || | | || Sbjct 77254 TCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTTTC 77313 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | |||||| || || || |||||||| || | || || |||| |||| | |||| Sbjct 77314 TGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCTTTA 77373 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | ||| || | || ||| || || || ||||| | |||||||| || Sbjct 77374 TCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAATCA 77433 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| ||||| |||||||| ||||| |||||| ||| || ||||| | || ||| | Sbjct 77434 GCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCTTCGAAC 77493 Query 7298 AACGAATCAATTTCAAT 7314 || |||||||| || || Sbjct 77494 AAAGAATCAATCTCGAT 77510 Score = 120 bits (132), Expect = 4e-22 Identities = 242/352 (69%), Gaps = 14/352 (4%) Strand=Plus/Plus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTC-----G 6550 |||| |||| |||||| |||| || || || ||||| |||| ||||| | | Sbjct 76441 TCGATCGTTTGTTTCATATTGAATGCATAAGATT-CGAGAGCATTTTTCGCTGCAATACG 76499 Query 6551 ACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTT 6610 | |||| | || ||| |||| || | ||||| || || || || || ||||| Sbjct 76500 ATCTTTCT---GTGCTT--CATCATCCGCCTTATATTTCTCAGCTTCCTGTACCATTCGC 76554 Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTT 6669 ||||| || || || || || | || || ||||| ||||| |||||||| ||| | ||| Sbjct 76555 TCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTTCTGTTTT 76614 Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729 || | | ||||||| || ||||||||||||||||| || |||| |||||| | Sbjct 76615 -CCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATCGAATGT 76673 Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789 || | |||||| || ||| | || || | ||||| || | || || ||| |||| Sbjct 76674 GACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAATTTACC 76733 Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841 ||| | | | || || ||| | | ||||||||||||||| || | |||| Sbjct 76734 AAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTCATAAACCTGAATT 76785 Score = 114 bits (126), Expect = 2e-20 Identities = 178/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||| || || ||||| || || ||||||||||| ||||| || | |||| Sbjct 78077 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 78136 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || ||||| || | | | |||||| || |||||||| || || || || || || Sbjct 78137 -TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATA 78195 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || | || || ||| ||||| | ||| ||| | | ||| || | || Sbjct 78196 TGCTGGGACTGTGATAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTC 78255 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| | |||||| |||||||| ||||| | | || |||||| || || Sbjct 78256 CTTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAAGTTTTCGTCTCGCC 78315 Query 7834 GTTAAAATCAAC 7845 || | ||||| Sbjct 78316 CTTGTATTCAAC 78327 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || ||||| ||||| || || ||||| || || ||||| || || || || ||||| ||| Sbjct 83378 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 83437 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||||||| ||| | |||||||||| || ||||||||||| ||||| || || || Sbjct 83438 -TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATA 83496 Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738 || || || ||||| || || ||| Sbjct 83497 CGCTGGTACAGTTACTACGGCATCC 83521 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || |||||||| || || ||||| |||| || || || ||||| Sbjct 81646 TCATCATCAGCCTTGTACTTTTCGGCTTCCGCAACCATTCTTTCGATTTCATCCTTCGAC 81705 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | || |||||||| ||||| |||||||| | || || | || ||||| | Sbjct 81706 AAACGTCCTTTATCATTAGTAATTGTAATCTTATTATGCTTCCCAGTGGATTTATCCTGT 81765 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || ||||| | |||||| |||||||| | ||| || | || | |||||||| | Sbjct 81766 GCTGAGACATTTAGAATACCGTTTGCATCGATATCAAAAGTGACTTCGATTTGTGGAACA 81825 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||||| || | | || ||| |||| | || | ||||| || Sbjct 81826 CCACGAGGAGCAGGCGGAATTCCAGAAAGTTCGAATTTACCCAACAAGTTATTATCTCTC 81885 Query 6809 GCCTTCTTACGTTCACCTTCATAGAC 6834 | | || |||||||||||| || || Sbjct 81886 GTCATCGCACGTTCACCTTCGTAAAC 81911 >seq161 Length=57655 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | ||| ||||| ||||| || | ||||| |||||||| ||||| | || Sbjct 26197 TTTACCACGAAGAGGAAATACACCATATTTGTCACGTCCAACAACCCCCAGACCTGAAAC 26138 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || | | ||| || ||||||||||| |||| |||||| ||||||| |||| | | Sbjct 26137 AGCCAACGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACACTGTGCAGAATTCTT 26078 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | || ||||| || | |||||| | |||| Sbjct 26077 CGTACCAGCATCGTTAGCATCTTCCAATTTTGGCACACCC 26038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634972087584120