Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3612 127 5e-24
seq9110 122 2e-22
seq8094 86.0 1e-11
>seq3612
Length=5795
Score = 127 bits (140), Expect = 5e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| || ||||||||||| ||||| || || ||||| || || || ||||||||
Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || |||||||| || || || ||| || |||||||||| |||||| || |||
Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| ||||| ||||| | ||||||||
Sbjct 1482 AATGTTTTCACGAATATTTGCATTT 1506
>seq9110
Length=1366
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| |||||||| || || |||||||||||||| ||||| | || || | || || ||
Sbjct 432 AACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTC 373
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||| || || || ||||| |||||||| || || || |||||||| || ||||||||
Sbjct 372 CAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTG 313
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| ||| || |||||||| || || || || ||| || || || || | || ||
Sbjct 312 GATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTT 253
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || |||||||| | |||||
Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
>seq8094
Length=1710
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||| || || || || || || || ||||||||||| ||||| || ||||||||
Sbjct 1373 TACCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGG 1432
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || ||||| ||| ||||| | || | ||| || || ||||
Sbjct 1433 CTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCA 1492
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|| |||||||| | |||||
Sbjct 1493 GTGTCTTTACGAAAATCTGCAT 1514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109193841038381
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |