Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9110 123 2e-23 seq8094 100 2e-16 >seq9110 Length=1366 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || |||||| ||||| ||||| ||||| || | || | || || Sbjct 432 AACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTC 373 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||||||| |||||||||||||| || | || | ||||||||||| Sbjct 372 CAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTG 313 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| ||| | || | ||| ||| || || || | ||||||||||| Sbjct 312 GATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTT 253 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || ||||||||| Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCATA 222 >seq8094 Length=1710 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || ||| ||||| || ||||||||||| || | || | || || Sbjct 958 AACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTC 1017 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||||||||| || | ||| || || ||| | || | |||||||| || Sbjct 1018 CAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTG 1077 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| ||| | | || | || ||||| || || | ||||||||||| Sbjct 1078 GATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTT 1137 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||| ||||| || || ||||| Sbjct 1138 ACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324553509137304