Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq33 179 3e-39 seq229 140 3e-27 seq9110 105 5e-17 seq8094 86.0 5e-11 >seq33 Length=98161 Score = 179 bits (198), Expect = 3e-39 Identities = 257/358 (72%), Gaps = 7/358 (2%) Strand=Plus/Minus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| ||||| || ||||| | | ||| ||||| | || ||| ||||| Sbjct 78444 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 78385 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291 ||||| || ||||| ||| || | || |||| | ||| ||||| | | || || | Sbjct 78384 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAA-AGTGCAGGT 78326 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349 |||| | || || |||||| ||||| |||||||||| |||||||| Sbjct 78325 TGAATACAAGGGCGAGACGAA-AACTTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 78267 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | |||||||| |||| || || ||| ||||||| | ||| | |||||| || || | Sbjct 78266 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTATCA 78207 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||||||||| ||||||||||| || ||||| ||||||||| |||| || | Sbjct 78206 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 78147 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || ||||| || || |||||||||||||| || || || || |||| ||||| Sbjct 78146 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 78089 Score = 134 bits (148), Expect = 1e-25 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||| ||||||||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 83521 GGATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGA 83462 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||| |||| || ||||| ||||| || ||||| || || ||||||||||| Sbjct 83461 TGCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 83402 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||||||||| || |||||| Sbjct 83401 TATTGCATATGGTCTAGATAAA 83380 Score = 109 bits (120), Expect = 4e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 552434 TACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTAC 552493 || |||||| ||| |||||| ||| | | || ||||| ||||||| ||||||| Sbjct 76788 TAAAATTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAA 76729 Query 552494 TTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553 || | || || ||||| ||||||||||| || || |||||||||||||| || || Sbjct 76728 ATTCGAATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATT 76669 Query 552554 CGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || || ||||| ||||||||||| | || |||||||| Sbjct 76668 CGATATTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATC 76621 >seq229 Length=49082 Score = 140 bits (154), Expect = 3e-27 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||| | ||||||||| ||| || || | | || Sbjct 12418 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 12359 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | ||||||| | || ||||| || || |||||||| |||||||| Sbjct 12358 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 12299 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || |||||||| || |||||| || || |||||| | ||||| ||||||||| Sbjct 12298 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 12239 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || | || ||||| || ||||| Sbjct 12238 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAA 12204 Score = 91.5 bits (100), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||||||||| ||||| || |||||||| ||| | || || | | || |||| || Sbjct 11159 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTATTTCGGG---- 11104 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 ||| |||| ||| | |||||| | ||||||| | |||| | |||||||| | Sbjct 11103 --TGAAGAAAGCACTGGTGAC-ATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTAT 11047 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||||||||| ||| | ||||| || ||||| | || || ||| ||| ||| || Sbjct 11046 TGAAACAGTTGGTGGTGTAATGACCAAACTTATTCAAAGGAACACTGTTATCCCTACCAA 10987 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 ||| || | || |||||| | |||||||| | | ||||| ||||| Sbjct 10986 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 10933 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 || |||||||| | | || || |||||||| || || || | ||||||||| || Sbjct 12210 AGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 12269 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || | ||||||| |||||||||||||||||||||||||| || ||||| || Sbjct 12270 GCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACT 12329 Query 361823 GTAATCACTGC-TTTTTCA 361840 || | ||||| | ||||| Sbjct 12330 GTGACAACTGCATGTTTCA 12348 >seq9110 Length=1366 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| || |||||| |||||| ||||| | || || | Sbjct 440 AGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGA 381 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | |||||||||||||| || |||| ||||||||| || ||||| || || Sbjct 380 CCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCC 321 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || ||||| || ||| ||| || ||| || ||||||| | ||| || || || Sbjct 320 TTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTAC-CTCCAGCGT 262 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| |||||||| || || |||||||| |||||| Sbjct 261 TATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCATA 222 >seq8094 Length=1710 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||||||||||| || |||||||| |||||||| | Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| || ||||| | | ||| ||| | || | ||||| ||||| || Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTAC-TTCCAACGTTATCGTTTTGCCAGTCAG 1493 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || || |||||||| ||||| Sbjct 1494 TGTCTTTACGAAAATCTGCAT 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028225458864070