Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq33 179 3e-39
seq229 140 3e-27
seq9110 105 5e-17
seq8094 86.0 5e-11
>seq33
Length=98161
Score = 179 bits (198), Expect = 3e-39
Identities = 257/358 (72%), Gaps = 7/358 (2%)
Strand=Plus/Minus
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|||| ||||| ||||| || ||||| | | ||| ||||| | || ||| |||||
Sbjct 78444 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 78385
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291
||||| || ||||| ||| || | || |||| | ||| ||||| | | || || |
Sbjct 78384 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAA-AGTGCAGGT 78326
Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349
|||| | || || |||||| ||||| |||||||||| ||||||||
Sbjct 78325 TGAATACAAGGGCGAGACGAA-AACTTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 78267
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| |||||||| |||| || || ||| ||||||| | ||| | |||||| || || |
Sbjct 78266 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTATCA 78207
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || ||||||||||| ||||||||||| || ||||| ||||||||| |||| || |
Sbjct 78206 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 78147
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||| || ||||| || || |||||||||||||| || || || || |||| |||||
Sbjct 78146 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 78089
Score = 134 bits (148), Expect = 1e-25
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| ||| ||||||||||||| ||||| ||||| || ||||| ||||| || |||||
Sbjct 83521 GGATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGA 83462
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| || ||| |||| || ||||| ||||| || ||||| || || |||||||||||
Sbjct 83461 TGCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 83402
Query 550516 ACTTGCATATGGACTTGATAAA 550537
|||||||||| || ||||||
Sbjct 83401 TATTGCATATGGTCTAGATAAA 83380
Score = 109 bits (120), Expect = 4e-18
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 552434 TACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTAC 552493
|| |||||| ||| |||||| ||| | | || ||||| ||||||| |||||||
Sbjct 76788 TAAAATTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAA 76729
Query 552494 TTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553
|| | || || ||||| ||||||||||| || || |||||||||||||| || ||
Sbjct 76728 ATTCGAATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATT 76669
Query 552554 CGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601
|||||| || || ||||| ||||||||||| | || ||||||||
Sbjct 76668 CGATATTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATC 76621
>seq229
Length=49082
Score = 140 bits (154), Expect = 3e-27
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||| | ||||||||| ||| || || | | ||
Sbjct 12418 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 12359
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | ||||||| | || ||||| || || |||||||| ||||||||
Sbjct 12358 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 12299
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
||||| || |||||||| || |||||| || || |||||| | ||||| |||||||||
Sbjct 12298 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 12239
Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| ||||| || || | || ||||| || |||||
Sbjct 12238 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAA 12204
Score = 91.5 bits (100), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
||||||||||| ||||| || |||||||| ||| | || || | | || |||| ||
Sbjct 11159 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTATTTCGGG---- 11104
Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
||| |||| ||| | |||||| | ||||||| | |||| | |||||||| |
Sbjct 11103 --TGAAGAAAGCACTGGTGAC-ATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTAT 11047
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
||||||||||| ||| | ||||| || ||||| | || || ||| ||| ||| ||
Sbjct 11046 TGAAACAGTTGGTGGTGTAATGACCAAACTTATTCAAAGGAACACTGTTATCCCTACCAA 10987
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
||| || | || |||||| | |||||||| | | ||||| |||||
Sbjct 10986 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 10933
Score = 86.0 bits (94), Expect = 5e-11
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762
|| |||||||| | | || || |||||||| || || || | ||||||||| ||
Sbjct 12210 AGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 12269
Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822
|| || | ||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 12270 GCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACT 12329
Query 361823 GTAATCACTGC-TTTTTCA 361840
|| | ||||| | |||||
Sbjct 12330 GTGACAACTGCATGTTTCA 12348
>seq9110
Length=1366
Score = 105 bits (116), Expect = 5e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || || ||||| || |||||| |||||| ||||| | || || |
Sbjct 440 AGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGA 381
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|| || | |||||||||||||| || |||| ||||||||| || ||||| || ||
Sbjct 380 CCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCC 321
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435
|| ||||| || ||| ||| || ||| || ||||||| | ||| || || ||
Sbjct 320 TTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTAC-CTCCAGCGT 262
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| ||||| |||||||| || || |||||||| ||||||
Sbjct 261 TATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCATA 222
>seq8094
Length=1710
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||||||||||| || |||||||| |||||||| |
Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| || ||||| | | ||| ||| | || | ||||| ||||| ||
Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTAC-TTCCAACGTTATCGTTTTGCCAGTCAG 1493
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| || |||||||| |||||
Sbjct 1494 TGTCTTTACGAAAATCTGCAT 1514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028225458864070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |