Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8094 120 2e-22 seq10810 116 3e-21 seq3027 116 3e-21 seq9110 111 1e-19 seq3612 96.9 3e-15 seq18801 89.7 4e-13 >seq8094 Length=1710 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| || ||||| || || ||||| || || | | || | | Sbjct 952 ACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACC 1011 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| || || ||||| ||||| ||||||||||| || |||||||| || || Sbjct 1012 GTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTT 1071 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || ||| ||| || |||| | || || || | |||||||| | || | Sbjct 1072 ATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 1131 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||||||||| || || || ||||| Sbjct 1132 GGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 >seq10810 Length=964 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| | | || ||||| || |||||||| || || ||||| || |||||| Sbjct 794 TACCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTG 853 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || || ||||| |||| ||||||||||||| ||| ||||| ||||| | Sbjct 854 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATTGTTTTTCCGGTCA 913 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || |||||||| |||||||| Sbjct 914 ATGTCTTTACAAAGATCTGCAT 935 >seq3027 Length=7170 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||| || | || ||| ||||| ||||||| |||||||| |||||||| | Sbjct 5961 TTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTG 5902 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 | ||||||||||| | || ||||| ||||| ||||| | ||||| |||||||| | Sbjct 5901 TCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTC 5842 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || ||||||||||| || |||||| Sbjct 5841 AACGTTTTTACAAAAATTTGCATG 5818 >seq9110 Length=1366 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| || ||||||||||| ||||| ||||| | | || | | Sbjct 438 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 379 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| || || || ||||| || | || || ||||| || |||||||| || || Sbjct 378 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTT 319 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| ||| || | || | ||| ||||| | ||| || || || || | Sbjct 318 GTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTAT 259 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || ||||| || |||||||| Sbjct 258 GGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq3612 Length=5795 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || | || || || || || || ||||| || ||||| |||||||| Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| ||||||| ||| || ||||| || | ||| ||||| || Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| || ||||| ||||| Sbjct 1482 AATGTTTTCACGAATATTTGCAT 1504 >seq18801 Length=524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| | || ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 272 TACCGGAGAAGATCAAGCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGCATTTTCG 331 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | | | || ||||| | ||||| ||| | |||| |||||| || || | Sbjct 332 CTTTAACATTCTTGATGGTATCAGATGCTTCCATTTCCAATGTGATCGTTTTACCAGTAA 391 Query 101448 AAGTTTTTACAAATATCTG 101466 |||||||||||| || || Sbjct 392 GAGTTTTTACAAAAATTTG 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396180633536751