Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9110 136 3e-27 seq8094 123 2e-23 >seq9110 Length=1366 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||| || ||||| |||||||||||||| ||||| || Sbjct 450 GCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGA 391 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||||||| || |||||||| || ||||| || ||||||| || Sbjct 390 CAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGG 331 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| ||| || | | || || || || || || Sbjct 330 AATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTAC 271 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||| || ||||| || || | || ||||| ||||||||||| Sbjct 270 CTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||| || ||||| || || || ||||| || || || Sbjct 940 GCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGA 999 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| ||||| || || |||||||| |||| |||||||||||| | || Sbjct 1000 CAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGG 1059 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||| || |||||| ||| || | | | || || |||||||| Sbjct 1060 AATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCAC 1119 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 1120 TTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380843618289489