Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq33 221 8e-52 seq229 168 4e-36 seq9110 105 4e-17 >seq33 Length=98161 Score = 221 bits (244), Expect = 8e-52 Identities = 275/372 (74%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| ||| |||||||||||||||| ||||||||| | || || || ||| Sbjct 78444 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 78385 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| || ||||| || || || | |||| ||||||| |||||| | | | | Sbjct 78384 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTT 78325 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCAC--CGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | || || || ||| | |||||| | ||| ||||||| ||||||||||| Sbjct 78324 GAATACAAG--GGCGAGACGAAA--ACTTTCACTCCAGAAGAAATTTCATCAATGGTTTT 78269 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 | |||||||| |||| || ||| |||||| || | ||| | ||||| || || Sbjct 78268 GGTTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTAT 78209 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || ||||||||||| ||||| || || || ||||||||||||||| | || ||| Sbjct 78208 CACAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAAT 78149 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||||| ||||| | || ||||| |||||||||||||||||||| |||| ||||| Sbjct 78148 CGCTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 78089 Query 474865 TCTTGATAAGAA 474876 | | || ||||| Sbjct 78088 TTTGGACAAGAA 78077 Score = 114 bits (126), Expect = 8e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | ||||| ||||| ||||| |||||||||||||| |||||||| |||||| Sbjct 83520 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 83461 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 ||||| ||| | || || ||||| | || || || || || ||||| || || || Sbjct 83460 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 83401 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| |||||||| ||||| || Sbjct 83400 ATTGCATATGGTCTAGATAAAAA 83378 Score = 95.1 bits (104), Expect = 8e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 |||||| ||||||||||||||||||| | ||||| || ||||||| |||||||| || Sbjct 78809 AGGTAACCGAACAACACCATCATATGTGGCATTTACCGACACTGAACGCCTTATTGGTGA 78750 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTG 474518 ||| || ||| |||| | |||| ||||| ||||||| |||||| Sbjct 78749 TGCAGCCAAAAATCAGGTTGCAATGAATCCACATAATACTGTTTTTG 78703 Score = 95.1 bits (104), Expect = 8e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 81848 GGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATATCGATGCA 81789 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 || |||||||| ||||| | || |||||||| | | ||| ||| || || || Sbjct 81788 AACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAGCATAATAAGATTACA 81729 Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269 ||||| || || || | || | | || |||| || | ||||||| |||||| Sbjct 81728 ATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGCGGAAGCC 81669 Query 476270 AAAGAGT 476276 || ||| Sbjct 81668 GAAAAGT 81662 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 ||||||||||||||||| ||||||| | |||| ||||| || ||| | |||||| Sbjct 78104 GCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCAGCGATTGCACCAGAATCT 78163 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGC 290955 |||||| || || || | ||||| ||||| || |||||||| |||||||| Sbjct 78164 TTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACTGTGATAACAGC 78216 >seq229 Length=49082 Score = 168 bits (186), Expect = 4e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| ||||||| | |||||| | | ||||||||| ||| ||| |||||||| Sbjct 12418 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 12359 Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 ||| ||||||| | ||||||| | || || || || || ||||||||| | |||||| Sbjct 12358 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 12299 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 ||||| || |||||||| || | ||||| || || |||||| | ||||| || |||||| Sbjct 12298 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 12239 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| |||||||| | |||||||| || |||||||| Sbjct 12238 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAAGAA 12201 Score = 91.5 bits (100), Expect = 1e-12 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 474359 AGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAAT 474418 |||||||| | ||||| |||||||| ||| ||||| ||||||||||| ||||||||| Sbjct 12814 AGTTGTGTTGGTGTTTATAAAAATGGTCGAGTGGAAATCATTGCCAATGAACAAGGTAAT 12755 Query 474419 AGAACAACACCATCATATGTTTCTTTTAC------TGAAACTGAACATCTTATTGGAGAT 474472 || | || ||||| || || | ||||| || ||| | ||||||||| || Sbjct 12754 AGGATCACGCCATCGTACGTAGCATTTACTGGTGATGGTGGTGAGCGTCTTATTGGCGAC 12695 Query 474473 GCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTG 474532 || || ||| | || || | ||||| | || || | || |||| ||| | ||| Sbjct 12694 GCAGCCAAAAACCAGTTAACAACAAATCCGGAAAACACAGTCTTCGATGTCAAACGCTTG 12635 Query 474533 ATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAG 474592 ||||| || | | | ||| | ||||| ||| ||||| || |||||||| || Sbjct 12634 ATTGGACGAGAGTACAAAGATTCGACTGTACAACAAGATATCAAACACTGGCCTTTCAAT 12575 Query 474593 GT 474594 || Sbjct 12574 GT 12573 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 ||||| ||||||||||| || || | | |||| || || ||||| | | | |||| Sbjct 12228 GCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCGGCAATAGTACCTGCATCT 12287 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962 || || || ||||| ||||||||||| |||||||| ||||| | ||| || | || | Sbjct 12288 TTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTC 12347 Query 290963 actttctttttcaa-ataattttctgccatttgttttattt 291002 || ||||||| ||| ||| ||| || |||| ||| |||| Sbjct 12348 AC-TTCTTTTCCAAGATATGCTTCCGCAATTTCTTTCATTT 12387 >seq9110 Length=1366 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || || ||||| || |||||| || ||||||||| | || || Sbjct 443 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTA 384 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || || | || ||||| ||||| || || ||||| ||||| || ||||| || Sbjct 383 CGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCC 324 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| |||||| ||| || || |||||||||| | | || || Sbjct 323 TCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGC 264 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || || ||||| |||||||| || Sbjct 263 GTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTG 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267310879510964