Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq9110 176 6e-39 seq33 172 7e-38 seq229 149 8e-31 seq8094 140 4e-28 seq3612 127 3e-24 seq10810 100 4e-16 seq3027 100 4e-16 >seq9110 Length=1366 Score = 176 bits (194), Expect = 6e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || || |||||||| ||||| || || || ||||| || Sbjct 218 GTGGTATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAG 277 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| ||| | ||||| ||||| ||||| ||||| ||||||||||| | Sbjct 278 CCTCTGATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGG 337 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||||||||| || ||||| || |||||| | || || || ||||| || | |||| Sbjct 338 ATCAGCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATT 397 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||| || || || || ||||| ||||| | ||||| || || Sbjct 398 ATAATATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 449 >seq33 Length=98161 Score = 172 bits (190), Expect = 7e-38 Identities = 191/252 (76%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 ||||||| | || |||| |||| || |||| ||||||||||| || ||||| ||| Sbjct 78327 GTTGAATACAAGGGCGAGACGAAAACTTTCACTCCAGAAGAAATTTCATCAATGGTTTTG 78268 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 |||| |||||||| || || ||| | || | ||| | | || || ||||| ||| | Sbjct 78267 GTTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTATC 78208 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || || |||| ||| ||||| ||||| || || || || ||| ||| || Sbjct 78207 ACAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATC 78148 Query 195779 GCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || |||||||| |||| | |||||||||||||||||||||| || || ||||| ||||| Sbjct 78147 GCTGGTCTAAA-TGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 78089 Query 195838 TCTGGACAAGAA 195849 | |||||||||| Sbjct 78088 TTTGGACAAGAA 78077 Score = 134 bits (148), Expect = 2e-26 Identities = 188/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||||||||| ||||| || || || || || || |||| ||||| ||||| |||||| Sbjct 77507 GAGATTGATTCTTTGTTCGAAGGGATCGATTTTTACACAAACATTACGCGTGCCCGTTTT 77448 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 ||||| || |||||||||| | ||||| || ||||| ||| | | ||| Sbjct 77447 GAAGAACTATGTGCTGATTTGTTCCGCTCAACCATGGATCCGGTTGAGAAAGCATTGCGT 77388 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| ||||||||||| || | ||| |||| ||||| || || || |||||||| ||| Sbjct 77387 GACGCCAAGATGGATAAAGCTCAAGTTCATGACATTGTACTAGTAGGTGGATCAACGCGT 77328 Query 196313 ATTCCGAAGATTCAACAGATGCTT-TCT-AG-CTTCTTCAATAATAAAGATTTAAACAAA 196369 |||||||| | ||||| ||| ||| || |||||| | ||||| | || ||| Sbjct 77327 ATTCCGAAAGT---ACAGAAACTTCTCTCAGATTTCTTCTCTGGCAAAGAACTGAATAAA 77271 Query 196370 ACGATCAACCCGGATGAAG 196388 | || || || ||||||| Sbjct 77270 AGTATTAATCCAGATGAAG 77252 Score = 114 bits (126), Expect = 2e-20 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 196388 GCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAA- 196446 || || || |||||||| || || || || |||||||| || |||| | | || || Sbjct 77096 GCTGTGGCATATGGTGCAGCAGTACAAGCAGCTATTCTTTCTGGTGATAA--ATCGGAAG 77039 Query 196447 -CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGG 196505 ||| || || | || |||| || || ||||| | || || ||| |||||||||| | Sbjct 77038 CCGTACAGGACTTGTTGTTACTCGACGTCGCACCACTTTCACTTGGTATTGAAACAGCTG 76979 Query 196506 GTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAG 196565 | |||||||||||| ||||| | ||||||| ||||| || || || | | ||| Sbjct 76978 GAGGTGTTATGACTGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 76919 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 ||| | || || ||||||||||| || ||||||| |||||| || Sbjct 76918 CATTTACCACATACTCCGATAATCAGCCTGGTGTTCTTATTCAGGT 76873 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 196388 GCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAAC 196447 || || ||||||||||| || || || || || ||| | ||||| | | | || Sbjct 82238 GCTGTAGCTTATGGTGCTGCAGTGCAAGCAGCAATTTTATCAGGCGATAAATCAGATGCT 82179 Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 || |||||||| |||||| | ||||||||||| |||| |||||| | ||||| || ||| Sbjct 82178 GTACAAGATCTACTGCTATTAGATGTTGCACCATTATCACTGGGTATCGAAACTGCTGGT 82119 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTC 196567 ||||| |||||| | || | || || ||||| ||||| || || | || Sbjct 82118 GGTGTAATGACTGCGTTAATAAAAAGAAATACAACCATTCCAACAAAAACATCGCAGACA 82059 Query 196568 TTTTCAACGTATTCCGATAATCAACCAGGTGT 196599 || | || |||||||||||||||||||| || Sbjct 82058 TTCACTACCTATTCCGATAATCAACCAGGAGT 82027 Score = 105 bits (116), Expect = 9e-18 Identities = 182/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTT 196662 ||||| || |||||||| ||||| | | || | || || || |||| ||||| | || Sbjct 76784 ATTCAGGTTTATGAAGGTGAACG-TGCTATGACGAAAGACAATAATCTGCTTGGTAAATT 76726 Query 196663 CGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGA 196722 ||| ||| | || ||||| |||| || | ||||| || || ||| | || ||||| Sbjct 76725 CGAATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGA 76666 Query 196723 TATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGA 196782 ||| ||||| ||||| ||| | || || | || | || || | | || ||| | || Sbjct 76665 TATTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGA 76607 Query 196783 A-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | |||||| |||||||||||||| || || | || ||||| || ||||| || |||| Sbjct 76606 ACAAGATTACAATTACCAATGACAAAGGACGTTTGTCAAAGGATGAGATTGAGCGAATGG 76547 Query 196842 TTCAAGATGCGGAAAAGTA 196860 | || || || || || || Sbjct 76546 TACAGGAAGCTGAGAAATA 76528 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||||||||| |||||||| ||||| || || |||||||| ||| || | | |||||| Sbjct 83206 AATGTATTGATTTTTGATCTTGGTGGAGGCACTTTTGATGTGTCAATTTTAACTATTGAG 83147 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 | |||||| || |||||||| | || ||||| ||||||||||| || ||| Sbjct 83146 GATGGTATTTTTGAAGTAAAATCAACCGCTGGAGATACTCATCTTGGAGGT 83096 Score = 102 bits (112), Expect = 1e-16 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||| |||||||| | || ||||| | |||||| || || | ||| ||||| || |||| Sbjct 82605 TTGAAATTGATTCACTCTTCGACGGTACTGACTTTTACACTAGTATCACCCGAGCCCGTT 82546 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 |||||||| | |||||||||| | ||||| || ||||| ||| | | | Sbjct 82545 TTGAAGAGCTTTGTGCTGATTTGTTCCGTTCAACCATGGATCCCGTTGAGAAAGCATTGC 82486 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || ||||||||||| || | | |||| ||||| | || || || || || | Sbjct 82485 GTGATGCTAAGATGGATAAAGCTCAAATGCATGATATTGTTTTGGTTGGCGGTTCTACTC 82426 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 ||||||| || | ||| | |||| || ||||| | ||||| | ||||||| Sbjct 82425 GTATTCCAAAAGTACAAAAATTGCTCTCCGATTTCTTTTCTGGAAAAGAACTGAACAAAA 82366 Query 196371 CGATCAACCCGGATGA 196386 || || || ||||| Sbjct 82365 GCATTAATCCAGATGA 82350 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||||||||| ||||||||||| || ||||| || | || | ||||| | ||||| Sbjct 77949 ATCTTTGATCTTGGTGGTGGTACTTTCGATGTATCTATCCTAACCATTGAGGACGGTATT 77890 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTG 195977 ||||||||||| |||| |||||||| |||||||| || |||| Sbjct 77889 TTCGAAGTAAAATCTACGGCTGGTGACACTCATCTTGGAGGTG 77847 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| |||| || | ||||||||||| || | || || ||||| || ||| Sbjct 81848 GGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATATCGATGCA 81789 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 || || |||||||| ||| |||| |||| || | |||| || | | |||||| Sbjct 81788 AACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAGCATAATAAGATTACA 81729 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 ||||| ||||| || || || | || ||||| ||||| ||| | |||||| || || Sbjct 81728 ATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGCGGAAGCC 81669 Query 196853 GAAAAGTACAGGG 196865 |||||||||| || Sbjct 81668 GAAAAGTACAAGG 81656 >seq229 Length=49082 Score = 149 bits (164), Expect = 8e-31 Identities = 174/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || ||||| ||||||||||| | ||||| | ||| ||||| || | Sbjct 12433 GAAAAAACC-TTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAAT 12375 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 ||||||| | | | || ||| |||||| |||||||||| || |||||||||||||| Sbjct 12374 TGCGGAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTT 12315 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| ||||||| || || || || || || | | ||||||| || || || | | Sbjct 12314 TAATGATGCACAACGTCAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGT 12255 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | || |||||||||||||| || || || || |||||||| ||||| ||||| Sbjct 12254 CCGTATCATCAATGAACCAACTGCAGCCGCTATCGCTTATGGGCTGGATAAGAA 12201 >seq8094 Length=1710 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || |||||||| | || || ||||| || || | || || ||| | || Sbjct 1167 ATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 1108 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | ||||| ||||| || |||||||| ||||||||||| ||||| Sbjct 1107 GATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 1048 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || ||||| || ||||| | || || || ||||| || | || || || Sbjct 1047 CAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAAT 988 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || ||||| ||||| | ||||| || || Sbjct 987 ATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 941 >seq3612 Length=5795 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || |||||||| | ||||| || || || ||||| ||||| || ||||| Sbjct 1504 ATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTCT 1445 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || || ||||| |||||||| ||||| ||||| || ||| Sbjct 1444 GATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCAG 1385 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||||||||||||||| ||||| Sbjct 1384 CAACGACTTATTTTTGCAGGTAA 1362 >seq10810 Length=964 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| |||||||| || || | || |||||||| |||| || || || || |||| Sbjct 936 TATGCAGATCTTTGTAAAGACATTGACCGGAAAAACAATCATTCTTGAAGTGGAAGCGTC 877 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| | || || | ||||| || || || |||||||| || ||||| || || || Sbjct 876 AGACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAACA 817 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 ||||| || |||||||||||| Sbjct 816 ACAACGCCTAGTTTTTGCTGGTA 794 >seq3027 Length=7170 Score = 100 bits (110), Expect = 4e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACT-GGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||||| || ||| |||| || |||||||| || | || || || ||| ||| Sbjct 5481 TATGCAAATCTTCGT-AAAGACCTTGCTAGGAAAAACAATTATTCTTGAAGTGGAGGCGT 5539 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||||| || || || | ||||| ||||| || || ||||| || ||| |||| ||| Sbjct 5540 CAGACACGATTGAGAATGTTAAAGCAAAGATACAGGAAAAGGAGGGTATTTCACCGAATC 5599 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||| || | |||| |||||||| Sbjct 5600 AGCAGCGCTTGATTTATGCTGGTA 5623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657695936142960