Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8094 111 3e-19 seq9110 107 4e-18 seq3612 105 1e-17 >seq8094 Length=1710 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || || | || || | || ||||||||||| || |||||||| |||| Sbjct 985 GATATTATAGTCCGACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCG 1044 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| ||||| || || || ||||| || || || ||| || || || | Sbjct 1045 CTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGT 1104 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | || ||||| | || ||||||||||| ||||| ||||| | || || || Sbjct 1105 ATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTG 1164 Query 192534 CATT 192537 |||| Sbjct 1165 CATT 1168 >seq9110 Length=1366 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| || | || || | || ||||| ||||| || |||||||||| || Sbjct 404 ATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGT 345 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || || || || ||||| || || ||| || || |||| | Sbjct 344 TGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTA 285 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | |||||| || || || |||||||| ||||| | ||| || | || |||||| Sbjct 284 TCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGC 225 Query 192535 AT 192536 || Sbjct 224 AT 223 >seq3612 Length=5795 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || | || || || |||||||| || || || ||||| || |||||| Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| |||| ||| ||||||||||| || || ||||| || || ||||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 |||||||| | ||||| |||||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984224661883050