Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3612 123 5e-23 seq9110 111 3e-19 seq8094 109 1e-18 >seq3612 Length=5795 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| | || || ||||||||||| || || || ||||| || |||||| Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| |||||||| ||||||||||| || || ||||| || || ||||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 |||||||| | |||||| |||||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507 >seq9110 Length=1366 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||||||||| || | | || |||| ||||| ||||| || ||||| Sbjct 413 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 354 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 |||| || || || || ||||| || || || || ||||| || || ||| || || Sbjct 353 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTC 294 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 |||||||| || | |||||| || || || |||||||| ||||| | ||| || | | Sbjct 293 TCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACG 234 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 233 AAAATCTGCAT 223 >seq8094 Length=1710 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 |||||||| || || | | || |||| ||||||||||| || ||||| || |||| | Sbjct 986 ATATTATAGTCCGACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGC 1045 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || || || ||||| || || || ||| || || || ||| Sbjct 1046 TGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTA 1105 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | || ||||| | || ||||||||||| ||||| ||||| | ||| || ||| Sbjct 1106 TCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGC 1165 Query 172068 ATT 172070 ||| Sbjct 1166 ATT 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904906966649400