Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq741 87.8 5e-12 >seq741 Length=24610 Score = 87.8 bits (96), Expect = 5e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| | || ||||| ||| | || || || || | || ||||||||| | Sbjct 4802 ATTTCTTTTAGCCGCGGAACGCCAAGCGTGACATTT---TTCGCCGAAACACCAGCGTAA 4858 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 || ||||| || ||||| | ||| |||| ||| ||||| | ||||||||| || || | Sbjct 4859 TGAAAAGTGTTTAGAGTCATTTGTGTAGCTGGTTCACCCAAACTTTGTGCTGCTATTGCA 4918 Query 301936 CCAACCATTTCTCCTGGTGCTACAATAGACTTCTTGTAG 301974 ||||||||||| || || |||||| | || |||| || Sbjct 4919 CCAACCATTTCACCGGGCTGTACAATCGCCTGCTTGAAG 4957 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||||| | ||| | ||||||| ||||| | ||||| ||||| |||||||| Sbjct 6818 ATCATAACTGACCATTACACTTTCCATAGCTTTGATCAGCCGACGTTGAATGTAACCAGT 6877 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | |||||||||||| ||||| || || || |||| |||||||| ||||| ||||| Sbjct 6878 TTCTGCTGTTTTTACAGCAGTATCGATAAGGCCTTCACGGCCACCCATTGCATGAAAGAA 6937 Query 302673 TAGCTC 302678 | ||| Sbjct 6938 GAACTC 6943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471435864327891