Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 149 6e-31
seq8094 127 2e-24
>seq9110
Length=1366
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || || || ||||| || ||||| || ||||||||| |
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| |||| |||| |||||||||||| || || || || || |||||
Sbjct 283 GATACTATCGAGAACGTTAAAGCAAA-GATCCAAGACAAGGAGGGCATTCCACCGGATCA 341
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||| | ||||||||||| |||||| ||||||| | | |||| ||||||||
Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|||||||| |||||||| || ||| |||| | || | ||||| |||
Sbjct 402 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGC 450
>seq8094
Length=1710
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| |||| |||||||| || ||| | ||||| || || |
Sbjct 1167 ATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 1108
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| ||||||||| || || || || || || || ||||||
Sbjct 1107 GATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 1048
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||||||| ||||| ||||||| | | |||| || |||||
Sbjct 1047 CAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAAT 988
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||||||||| || ||| |||| | || | ||||| |||
Sbjct 987 ATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGC 940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449783759036040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |