Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9110 149 6e-31 seq8094 127 2e-24 >seq9110 Length=1366 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || ||||| || ||||| || ||||||||| | Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||| |||| |||||||||||| || || || || || ||||| Sbjct 283 GATACTATCGAGAACGTTAAAGCAAA-GATCCAAGACAAGGAGGGCATTCCACCGGATCA 341 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | ||||||||||| |||||| ||||||| | | |||| |||||||| Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| |||||||| || ||| |||| | || | ||||| ||| Sbjct 402 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGC 450 >seq8094 Length=1710 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| |||| |||||||| || ||| | ||||| || || | Sbjct 1167 ATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 1108 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||| || || || || || || || |||||| Sbjct 1107 GATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 1048 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| ||||| ||||||| | | |||| || ||||| Sbjct 1047 CAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAAT 988 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||||||||| || ||| |||| | || | ||||| ||| Sbjct 987 ATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGC 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449783759036040