Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8094 104 2e-17 >seq8094 Length=1710 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || ||||||||||| || |||||||| || | ||| ||||||| Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || ||| |||||| ||||| || ||| | || ||||| Sbjct 1108 GGATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCA 1049 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || ||||| ||||||||| || || ||||||| || Sbjct 1048 ACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAA 989 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || ||| | ||| |||| Sbjct 988 TATCCAGAAGGAATCGACGCTTCACCTGGT 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398778392481427