Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq9110 105 1e-17 seq3612 104 4e-17 seq8094 96.9 5e-15 >seq9110 Length=1366 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| ||| | || || ||||| || || | || |||||| | Sbjct 224 TGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCTG 283 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | || || ||| || || ||| || || ||||||||||| ||||| | Sbjct 284 ATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAGC 343 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || |||| || ||||| || ||||| || || || | | ||| | | |||||||||| Sbjct 344 AACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATA 403 Query 146212 TACAAAAAGAATCGAC 146227 | |||||||||||||| Sbjct 404 TTCAAAAAGAATCGAC 419 >seq3612 Length=5795 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | |||||||| || || || || ||||| |||| |||||| | Sbjct 1503 TGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTCTG 1444 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || |||||| || ||| || ||||| ||||| || || | Sbjct 1443 ATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCAGC 1384 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || |||| |||||||||||||| Sbjct 1383 AACGACTTATTTTTGCAGGTAA 1362 >seq8094 Length=1710 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| || || | || || || | | Sbjct 1166 TGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGG 1107 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || ||| || || || ||| || ||||||||||| ||||||| Sbjct 1106 ATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAAC 1047 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || |||||||| || || | | ||| | | || ||||||| Sbjct 1046 AGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAATA 987 Query 146212 TACAAAAAGAATCGAC 146227 | || || |||||||| Sbjct 986 TCCAGAAGGAATCGAC 971 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| ||| | || || ||||| || || | || |||||| | Sbjct 1513 TGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCGG 1454 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||||||| ||||| || |||||| |||||||| || ||||| | Sbjct 1453 ATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAGC 1394 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | |||||||||||||||| Sbjct 1393 AGCGTCTCATTTTTGCAGGTA 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785967470419560