Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9110 147 2e-30 seq10810 93.3 3e-14 seq8094 84.2 2e-11 >seq9110 Length=1366 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||||| |||||||||||||| |||||||||| | || ||| Sbjct 438 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 379 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||| || ||| | || | || |||||||||||| ||||| ||||| || Sbjct 378 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTT 319 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || | || | ||| ||||| |||||| || || ||||| Sbjct 318 GTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTAT 259 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | || || || || |||||||| Sbjct 258 GGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq10810 Length=964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 ||| || ||||||||||||||||| || || || | |||| ||| ||| | || || || Sbjct 813 TTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCAACCGT 872 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || ||| ||||||||| | || ||||| || || || || || ||||| ||||| Sbjct 873 GTCTGACGCTTCCACTTCAAGAATGATTGTTTTTCCGGTCAATGTCTTTACAAAGATCTG 932 Query 29784 CATTTT 29789 ||| || Sbjct 933 CATATT 938 >seq8094 Length=1710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||| |||||||| || || |||||| | ||| ||| | || | ||| Sbjct 1393 TGCTGATCAGGAGGAATGCCCTCTTTATCCTG-AATTTTGGCTTTTACATTCTCGATAGT 1451 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||||||||| | ||||| ||||||||||| | || || || || ||||| Sbjct 1452 ATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTG 1511 Query 29784 CAT 29786 ||| Sbjct 1512 CAT 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385124161969263