Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq33 183 2e-40 seq229 165 6e-35 >seq33 Length=98161 Score = 183 bits (202), Expect = 2e-40 Identities = 264/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| ||| || || ||||||||||| ||||||| || ||| Sbjct 78077 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 78136 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| ||| || | ||||||||| ||||||| ||||| || || |||||| Sbjct 78137 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 78196 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || ||||| ||||| | ||| | | |||| | | || || |||| Sbjct 78197 GCTGGGACTGTGATAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 78256 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTCAT 282569 ||||||||| |||| |||||||||||||| ||||||| ||| || || | || Sbjct 78257 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAAGTT--TTCGTCTCGC 78314 Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626 | ||| || | | | |||||| | |||| |||| | ||||| ||||||| Sbjct 78315 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 78374 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | |||||||||||| || || | |||| ||| | | |||||| |||||||| | Sbjct 78375 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 78434 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 78435 CATCTGAAAT 78444 Score = 120 bits (132), Expect = 2e-21 Identities = 180/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| ||||||| Sbjct 77252 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 77311 Query 281853 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | | Sbjct 77312 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 77370 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 ||||||| || | || || |||| ||||| || || | | | ||||| Sbjct 77371 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 77430 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 || | ||| |||||||| || || | |||| | | | |||| || |||||| Sbjct 77431 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCTTCG 77490 Query 282032 AACAAAGAATCAA 282044 ||||||||||||| Sbjct 77491 AACAAAGAATCAA 77503 Score = 118 bits (130), Expect = 8e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| |||||||| |||| ||||||||||||||| || || || |||| | ||| Sbjct 83378 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 83437 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| || |||||||| || ||||||| ||| ||||| || ||||| Sbjct 83438 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 83497 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || ||||| | |||||||| Sbjct 83498 GCTGGTACAGTTACTACGGCATC 83520 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 ||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || ||| Sbjct 78086 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 78145 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 || ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| || Sbjct 78146 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 78205 Query 86236 GTAATAACTGC 86246 || ||||| || Sbjct 78206 GTGATAACAGC 78216 Score = 98.7 bits (108), Expect = 7e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||| |||||| | |||| | |||| |||||||||||| ||||| || Sbjct 78703 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCTGCATCACCAATAAGGC 78762 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 78763 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 78809 Score = 95.1 bits (104), Expect = 9e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || || Sbjct 76548 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 76607 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 ||| |||||||||||| || | ||||| | ||||||||| || || | ||| Sbjct 76608 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 76667 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||||||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 76668 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 76727 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 | | || || |||||| ||||| || | |||||||| || Sbjct 76728 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 76772 >seq229 Length=49082 Score = 165 bits (182), Expect = 6e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || || Sbjct 12192 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 12251 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| || || ||||| | ||||||||||| |||||||| | ||||| ||| Sbjct 12252 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 12311 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || || | ||| |||| | | ||||||||||||| ||| || Sbjct 12312 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 12371 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || ||| ||||||||||| | || ||| | |||||||| ||| |||| Sbjct 12372 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGGAG 12420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739636554246918