Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 89.7 5e-13
seq3612 82.4 7e-11
>seq9110
Length=1366
Score = 89.7 bits (98), Expect = 5e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240
|| ||| || || | ||| | ||| | |||| || ||||||||||| || || |||||
Sbjct 453 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 394
Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300
|| || | ||| || | ||||| || ||| |||| || ||||||||||| ||
Sbjct 393 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 334
Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360
|| ||||| || ||||| || ||| ||| | | || | || || | || |||
Sbjct 333 TGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTC 274
Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
||| || | || | || ||||| || | ||| |||||||| || ||||||
Sbjct 273 TACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCATA 222
>seq3612
Length=5795
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||| ||| | || || |||||||| || || || ||||| || || || ||||||
Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | || | || || | | |||||| |||| || | ||||||||| |||
Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
|||||||| ||||||||||||||
Sbjct 1482 AATGTTTTCACGAATATTTGCAT 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488420380047600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |