Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9110 174 3e-38 seq8094 161 2e-34 seq3612 107 4e-18 seq10810 104 5e-17 >seq9110 Length=1366 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| || || |||||||| || ||||||||||| || || | | ||| Sbjct 438 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 379 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | |||||||| ||||||||||||| ||| ||||| || || || || ||||| Sbjct 378 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTT 319 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||||||||| || || || || |||||| | |||||| |||| ||||| Sbjct 318 GTCTTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTAT 259 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | |||||||| || |||||||| Sbjct 258 GGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| || || ||||| ||||| |||||||| || || || | | ||| Sbjct 952 ACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACC 1011 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | ||||||||| |||||||| | || ||||||||||| || || || ||||| Sbjct 1012 GTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTT 1071 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||||||||| || ||||| || ||||| || || |||||||| ||||| Sbjct 1072 ATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 1131 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || || || || || |||||| Sbjct 1132 GGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | || ||||| ||||| || || || ||||| ||||| || ||| Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || ||||| | |||||||||||| |||||||| ||||| |||| Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494 Query 82791 GTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514 >seq3612 Length=5795 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || |||| ||| || || || || || || |||||||| ||||| || Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| |||||| | |||||| || | || ||||||||||| ||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| |||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATT 1505 >seq10810 Length=964 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| | ||| | |||||| || || || || || |||||||| || || |||||| Sbjct 796 CCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCT 855 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||| ||| || | ||| ||||| | | | || || || || ||||| Sbjct 856 TTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATTGTTTTTCCGGTCAAT 915 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||||||||| |||||||| Sbjct 916 GTCTTTACAAAGATCTGCAT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981572549922377