Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq231 84.2 5e-11 >seq231 Length=48944 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 167199 CGAAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTA 167258 ||||||| || || ||||| || || |||| || |||||| | |||||||| Sbjct 6804 CGAAATACGTCGAATGAGCAGAGCAACTCATTATCAACAGTCATTATTGCTGCAGCATTA 6745 Query 167259 TCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAA 167317 || |||||| |||| |||| ||| || ||||| | ||| || ||||||||||| ||| Sbjct 6744 TCAAATTCAC-CGCAATAATGTGGAGCCGAAAAGATAGTCACCAATTTACGATTCGCAAA 6686 Query 167318 TAATTCATAACCATCTTCAACAACTTCATGGGC 167350 |||||||| ||||||| || || | ||| || Sbjct 6685 AAATTCATATCCATCTTGGACGACCTGATGTGC 6653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186504984152523