Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8094 96.9 3e-15 seq9110 84.2 2e-11 >seq8094 Length=1710 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131982 TACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTT 132041 |||| | | | || |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 1373 TACCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGG 1432 Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101 ||| | | || | |||||| | | || ||||| | ||| | |||||| ||||||| Sbjct 1433 CTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCA 1492 Query 132102 GAGTTTTTATGAAAATCTGCATG 132124 | || |||| ||||||||||||| Sbjct 1493 GTGTCTTTACGAAAATCTGCATG 1515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || || ||||| || ||||| || || | ||||| |||| | Sbjct 974 GATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCA 1033 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||||||||| || ||||| || ||||| || ||| ||| | Sbjct 1034 AAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTTGCTTTAACG 1093 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | ||||||||| | ||| | |||||||| || | |||||| Sbjct 1094 TTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTC 1153 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 1154 ACGAAAATTTGCAT 1167 >seq9110 Length=1366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || || ||||| || || | |||||| |||| | Sbjct 416 GATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCA 357 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||| || || ||||| || || ||||| || || || || ||| ||| | Sbjct 356 AAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACG 297 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | || || || | ||| | ||||| ||||| || || ||| Sbjct 296 TTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTT 237 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 236 ACGAAAATCTGCAT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476490599493480