Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 96.9 3e-15
seq9110 84.2 2e-11
>seq8094
Length=1710
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 131982 TACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTT 132041
|||| | | | || |||||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct 1373 TACCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGG 1432
Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101
||| | | || | |||||| | | || ||||| | ||| | |||||| |||||||
Sbjct 1433 CTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCA 1492
Query 132102 GAGTTTTTATGAAAATCTGCATG 132124
| || |||| |||||||||||||
Sbjct 1493 GTGTCTTTACGAAAATCTGCATG 1515
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || || || || || ||||| || ||||| || || | ||||| |||| |
Sbjct 974 GATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCA 1033
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | |||||||||||||| || ||||| || ||||| || ||| ||| |
Sbjct 1034 AAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTTGCTTTAACG 1093
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | | ||||||||| | ||| | |||||||| || | ||||||
Sbjct 1094 TTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTC 1153
Query 132110 ATGAAAATCTGCAT 132123
| |||||| |||||
Sbjct 1154 ACGAAAATTTGCAT 1167
>seq9110
Length=1366
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||||||||| || || || || ||||| || || | |||||| |||| |
Sbjct 416 GATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCA 357
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
||||||| || || ||||| || || ||||| || || || || ||| ||| |
Sbjct 356 AAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACG 297
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | | || || || | ||| | ||||| ||||| || || |||
Sbjct 296 TTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTT 237
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 236 ACGAAAATCTGCAT 223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476490599493480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |