Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8094 98.7 9e-16 seq9110 95.1 1e-14 >seq8094 Length=1710 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || ||||| ||| | || || ||| |||| ||| | ||||| |||||| Sbjct 1515 CATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTC 1456 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | |||||| |||||| ||||||||||| || || || ||||| Sbjct 1455 GGATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCA 1396 Query 25294 GCAAAGACTCATTT 25307 ||| | ||||||| Sbjct 1395 GCAGCGTCTCATTT 1382 >seq9110 Length=1366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| ||| | || || ||| | || ||| | || || |||||| Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || ||| ||| || || || ||||| || || || |||||| Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| |||| || | | ||| ||||| | || || | | | | |||| ||||| | Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTC--GGATTATA 400 Query 25353 ATATTCAAAAAGAATCCACCATTCA 25377 |||||||||||||||| || |||| Sbjct 401 ATATTCAAAAAGAATCGACGCTTCA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444981774425760