Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 98.7 9e-16
seq9110 95.1 1e-14
>seq8094
Length=1710
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || ||||| ||| | || || ||| |||| ||| | ||||| ||||||
Sbjct 1515 CATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTC 1456
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||||||||| | |||||| |||||| ||||||||||| || || || |||||
Sbjct 1455 GGATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCA 1396
Query 25294 GCAAAGACTCATTT 25307
||| | |||||||
Sbjct 1395 GCAGCGTCTCATTT 1382
>seq9110
Length=1366
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || ||||| ||| | || || ||| | || ||| | || || ||||||
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||||||| | || ||| ||| || || || ||||| || || || ||||||
Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
||| |||| || | | ||| ||||| | || || | | | | |||| ||||| |
Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTC--GGATTATA 400
Query 25353 ATATTCAAAAAGAATCCACCATTCA 25377
|||||||||||||||| || ||||
Sbjct 401 ATATTCAAAAAGAATCGACGCTTCA 425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444981774425760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |