Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8094 125 7e-24 seq3612 89.7 5e-13 seq3027 86.0 6e-12 >seq8094 Length=1710 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| ||||| |||||||| || || || ||||| | || || | || ||| || Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCG-TACGACCGTCCTC 1017 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||||| || ||||| ||||| ||||| ||||| || || ||||| || || || || Sbjct 1018 CAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTG 1077 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || ||| ||| || || | || || || | ||||| || | || |||||||| Sbjct 1078 GATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTT 1137 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| ||||||||||| ||||||||||||||| Sbjct 1138 ACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||||||||| | |||||||||||| || || ||||| ||||| || |||||||| | Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | ||| || || | || || ||||| || || | Sbjct 1435 TTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGT 1494 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||| ||||| Sbjct 1495 GTCTTTACGAAAATCTGCAT 1514 >seq3612 Length=5795 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||||||||| | || ||||| || || || ||||| || || || |||||||| Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || |||||||| || || || ||||| || || || || Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| ||||| |||||||||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATTTTG 1508 >seq3027 Length=7170 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || ||||||| | || ||||||||| |||| || ||||||||||||||||| Sbjct 5963 GTTTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCC 5904 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | | || || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 5903 TGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCT 5844 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| || ||||||||||| Sbjct 5843 TCAACGTTTTTACAAAAATTTGCAT 5819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505270515252360