Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 134 2e-26
seq8094 132 5e-26
seq3612 129 7e-25
seq10810 87.8 2e-12
>seq9110
Length=1366
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| ||||| ||||| || || || || ||||| || | |
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | || || || || || ||||||||||| ||||| || || |||
Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || ||||| ||||| || || || | ||||| | |||||| || | || ||||||
Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 402
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| || || | ||||||||||| ||
Sbjct 403 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 449
>seq8094
Length=1710
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | || || || || || || | || || ||| |
Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | ||| | || || || || ||||| |||||||| ||||| ||||| ||
Sbjct 1108 GGATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCA 1049
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| | || ||||| || || ||| | ||||| | |||||| || | ||||||||
Sbjct 1048 ACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAA 989
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| |||||||| || ||||| || || | ||||||||||| ||
Sbjct 988 TATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 941
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || ||||| || || || | || || || |
Sbjct 1514 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 1455
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || || ||||||||||| || ||||| |||||||| || |||
Sbjct 1454 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAG 1395
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
|||||||| |||||||| ||||
Sbjct 1394 CAGCGTCTCATTTTTGCAGGTA 1373
>seq3612
Length=5795
Score = 129 bits (142), Expect = 7e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | || |||||||| ||||| |||||||| || ||
Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| ||||||||||||||||||| |||||||| || || || |||||
Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 1386
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
||| || || |||||||| |||||
Sbjct 1385 GCAACGACTTATTTTTGCAGGTAA 1362
>seq10810
Length=964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 6/145 (4%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462
||||| |||||||| ||||| | ||||| || || || | |||||| || || ||||
Sbjct 935 ATGCAGATCTTTGTAAAGACATTGACCGGAAAAACAATCATTCTTGAAGTGGAAGCGTCA 876
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| | | ||| ||| | || || ||||| ||||| |||||||| ||||| || ||
Sbjct 875 G---ACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAA 819
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547
|| || || ||| ||||||||||||
Sbjct 818 CAACAACGCCTAGTTTTTGCTGGTA 794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570166090082160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |