Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9110 134 2e-26 seq8094 132 5e-26 seq3612 129 7e-25 seq10810 87.8 2e-12 >seq9110 Length=1366 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| ||||| || || || || ||||| || | | Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | || || || || || ||||||||||| ||||| || || ||| Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAG 342 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| ||||| || || || | ||||| | |||||| || | || |||||| Sbjct 343 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 402 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| || || | ||||||||||| || Sbjct 403 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 449 >seq8094 Length=1710 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || || || || || | || || ||| | Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || || || || ||||| |||||||| ||||| ||||| || Sbjct 1108 GGATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCA 1049 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | || ||||| || || ||| | ||||| | |||||| || | |||||||| Sbjct 1048 ACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAA 989 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| |||||||| || ||||| || || | ||||||||||| || Sbjct 988 TATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 941 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || ||||| || || || | || || || | Sbjct 1514 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 1455 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||||||||| || ||||| |||||||| || ||| Sbjct 1454 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAG 1395 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| |||||||| |||| Sbjct 1394 CAGCGTCTCATTTTTGCAGGTA 1373 >seq3612 Length=5795 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || |||||||| ||||| |||||||| || || Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| ||||||||||||||||||| |||||||| || || || ||||| Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 1386 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| || || |||||||| ||||| Sbjct 1385 GCAACGACTTATTTTTGCAGGTAA 1362 >seq10810 Length=964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||| |||||||| ||||| | ||||| || || || | |||||| || || |||| Sbjct 935 ATGCAGATCTTTGTAAAGACATTGACCGGAAAAACAATCATTCTTGAAGTGGAAGCGTCA 876 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | | | ||| ||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 875 G---ACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAA 819 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||| |||||||||||| Sbjct 818 CAACAACGCCTAGTTTTTGCTGGTA 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570166090082160