Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq8094 116 9e-21 seq10810 87.8 4e-12 >seq8094 Length=1710 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || || || ||||| ||||| |||| || || Sbjct 947 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTA 1006 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| || || || || ||||| | || ||||| || || |||| || Sbjct 1007 CGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCC 1066 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| |||||||||||| ||| |||||||||||||| || || || || || | Sbjct 1067 TCCTTATCCTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAC 1126 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | ||| || || || | |||||| Sbjct 1127 GTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 >seq10810 Length=964 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||||||||| || || |||| || ||||| |||||||| ||| ||| || || || Sbjct 808 AGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCA 867 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 | ||||| || ||| || || ||| |||| || ||||| || | ||||||||||| Sbjct 868 ACCGTGTCTGACGCTTCCACTTCAAGAATGATTGTTTTTCCGGTCAATGTCTTTACAAAG 927 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 928 ATCTGCATATT 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158851358352695