Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8094 87.8 1e-12 seq9110 84.2 1e-11 >seq8094 Length=1710 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | ||||| ||||| || || | ||||| || | | Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | ||| ||| || || || || || | || |||||||| Sbjct 1108 GGATACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCA 1049 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 |||||| || || |||||||| |||||| |||| |||| Sbjct 1048 ACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACG 1011 >seq9110 Length=1366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || ||||| || || || || || || || | Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || || ||||| | ||| || ||||| || || | || || ||||| Sbjct 283 GATACTATCGAGAACGTTAAAGC-AAAGATCCAAGACAAGGAGGGCATTCCACCGGATCA 341 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || |||| |||||||| ||||| |||| |||| || || | ||||| || Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 402 TATTCAAAAAGAATCGAC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926209123444