Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9110 127 5e-24 seq565 96.9 8e-15 seq3612 93.3 1e-13 >seq9110 Length=1366 Score = 127 bits (140), Expect = 5e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || ||||||||||| | ||| ||||| | || || Sbjct 443 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTA 384 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | ||| || || || ||||| |||||||| || || || ||||| || Sbjct 383 CGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCC 324 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| ||||||| | | | ||||| || || |||| ||| || || | Sbjct 323 TCCTTGTCTTGGATC-TTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAG 265 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || ||||| || | || |||| ||| | ||||| Sbjct 264 CGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq565 Length=29345 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||||||||| ||||| || || || || ||||| || || ||||||||||||||||| || Sbjct 18810 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGAATATAAGCAGAAACATCGCC 18869 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| |||| ||||| | ||| ||||| ||| Sbjct 18870 AGCTTGAGTTTCAATAACTGGTAGTGCTGTCAATGAGCCACCTCCA 18915 >seq3612 Length=5795 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || ||||||||||| ||||| || || || || ||||| || || || || Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || || || || || | ||| || || | || ||||||||||| ||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | ||| | ||||||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192221901008642