Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 127 5e-24
seq565 96.9 8e-15
seq3612 93.3 1e-13
>seq9110
Length=1366
Score = 127 bits (140), Expect = 5e-24
Identities = 163/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || ||||| || || ||||||||||| | ||| ||||| | || ||
Sbjct 443 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTA 384
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || | ||| || || || ||||| |||||||| || || || ||||| ||
Sbjct 383 CGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCC 324
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||| ||||||| | | | ||||| || || |||| ||| || || |
Sbjct 323 TCCTTGTCTTGGATC-TTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAG 265
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| || || ||||| || | || |||| ||| | |||||
Sbjct 264 CGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
>seq565
Length=29345
Score = 96.9 bits (106), Expect = 8e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||||||||| ||||| || || || || ||||| || || ||||||||||||||||| ||
Sbjct 18810 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGAATATAAGCAGAAACATCGCC 18869
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
||||| ||||| | ||| |||| ||||| | ||| ||||| |||
Sbjct 18870 AGCTTGAGTTTCAATAACTGGTAGTGCTGTCAATGAGCCACCTCCA 18915
>seq3612
Length=5795
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || ||||||||||| ||||| || || || || ||||| || || || ||
Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| || || || || || | ||| || || | || ||||||||||| |||
Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481
Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | ||| | |||||||||
Sbjct 1482 AATGTTTTCACGAATATTTGCATTTT 1507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192221901008642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |