Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq11 105 9e-18
seq16792 102 1e-16
seq2720 89.7 7e-13
>seq11
Length=130440
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548
||| ||||| ||||| |||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 103281 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 103222
Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608
|| || ||||| || | ||||||||||| || ||||||||||| | ||||||
Sbjct 103221 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 103162
Query 77609 AACAACTACTTTA 77621
||| | |||||||
Sbjct 103161 AACCATTACTTTA 103149
Score = 89.7 bits (98), Expect = 7e-13
Identities = 135/191 (71%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996
||||| ||| ||||| || ||||||||| || ||||| |||||||| |||
Sbjct 102294 CCCCAGGAATCTTCCAACCCGGGGCATTCAGCAGGACACATTAATGACCATATTTTATCG 102235
Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056
|| || || | ||| || ||||| |||||||||| | ||| |||| ||| ||
Sbjct 102234 TCACGTACGCGCTCCATGAAAAGATCCGGTATCCATAAACCAAAGAATAAATCACGA--- 102178
Query 78057 CTATGTTC---TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113
| | |||| ||||| ||| |||||| | || || ||||| || | |||||||| |
Sbjct 102177 CAACGTTCCAGTTCATCACCTACATTCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCA 102118
Query 78114 TGCCATGGTTC 78124
|||||||||||
Sbjct 102117 TGCCATGGTTC 102107
>seq16792
Length=566
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 26 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 85
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 86 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 145
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| || || ||||||||| ||
Sbjct 146 ATGTGTTGTGGTCTTTCAGCC 166
>seq2720
Length=8031
Score = 89.7 bits (98), Expect = 7e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548
||| ||||| | ||| |||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 5276 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 5217
Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608
|| || | ||| || | ||||||||||| || ||||||||||| | |||| |
Sbjct 5216 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 5157
Query 77609 AACAACTACTTT 77620
||| ||||| ||
Sbjct 5156 AACCACTACCTT 5145
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||| | || ||||| ||| |||||||| || |||||| |||||||| ||||||
Sbjct 4304 TCAAATGCTTCGCCCCACGAATCTTCCAATCCGGGACATTCAGCAGGGCACATTAATGAC 4245
Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044
|| ||| || || |||| ||| || ||||| || | ||||| | ||| |||
Sbjct 4244 CATATTTTATCGTCACGTACGCGTTCCATGAAAAGATCTGGCACCCATAAACCAAAGAAT 4185
Query 78045 AGATCTCGG----GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100
| ||| || |||| | |||| ||| ||| |||||| | | |||||||| ||
Sbjct 4184 AAATCACGACAGCGTTCAA-GTTCATCA---CCTACATTCTTCCTCAATTCGAGAAATTC 4129
Query 78101 CATAATATCAGAATGCCATGGTTC 78124
| |||||| ||||||||||||
Sbjct 4128 AAAAATATCCACATGCCATGGTTC 4105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694493022743520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |