Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 105 9e-18 seq16792 102 1e-16 seq2720 89.7 7e-13 >seq11 Length=130440 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||| ||||| ||||| |||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 103281 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 103222 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 || || ||||| || | ||||||||||| || ||||||||||| | |||||| Sbjct 103221 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 103162 Query 77609 AACAACTACTTTA 77621 ||| | ||||||| Sbjct 103161 AACCATTACTTTA 103149 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 ||||| ||| ||||| || ||||||||| || ||||| |||||||| ||| Sbjct 102294 CCCCAGGAATCTTCCAACCCGGGGCATTCAGCAGGACACATTAATGACCATATTTTATCG 102235 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 || || || | ||| || ||||| |||||||||| | ||| |||| ||| || Sbjct 102234 TCACGTACGCGCTCCATGAAAAGATCCGGTATCCATAAACCAAAGAATAAATCACGA--- 102178 Query 78057 CTATGTTC---TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | | |||| ||||| ||| |||||| | || || ||||| || | |||||||| | Sbjct 102177 CAACGTTCCAGTTCATCACCTACATTCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCA 102118 Query 78114 TGCCATGGTTC 78124 ||||||||||| Sbjct 102117 TGCCATGGTTC 102107 >seq16792 Length=566 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 26 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 85 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 86 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 145 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 146 ATGTGTTGTGGTCTTTCAGCC 166 >seq2720 Length=8031 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||| ||||| | ||| |||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 5276 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 5217 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 || || | ||| || | ||||||||||| || ||||||||||| | |||| | Sbjct 5216 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 5157 Query 77609 AACAACTACTTT 77620 ||| ||||| || Sbjct 5156 AACCACTACCTT 5145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||| | || ||||| ||| |||||||| || |||||| |||||||| |||||| Sbjct 4304 TCAAATGCTTCGCCCCACGAATCTTCCAATCCGGGACATTCAGCAGGGCACATTAATGAC 4245 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || ||| || || |||| ||| || ||||| || | ||||| | ||| ||| Sbjct 4244 CATATTTTATCGTCACGTACGCGTTCCATGAAAAGATCTGGCACCCATAAACCAAAGAAT 4185 Query 78045 AGATCTCGG----GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 | ||| || |||| | |||| ||| ||| |||||| | | |||||||| || Sbjct 4184 AAATCACGACAGCGTTCAA-GTTCATCA---CCTACATTCTTCCTCAATTCGAGAAATTC 4129 Query 78101 CATAATATCAGAATGCCATGGTTC 78124 | |||||| |||||||||||| Sbjct 4128 AAAAATATCCACATGCCATGGTTC 4105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694493022743520