Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 109 8e-19 seq2720 95.1 2e-14 >seq11 Length=130440 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| ||||| ||||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 103281 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 103222 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| ||||| || | || |||||||| ||| ||||||||||| | |||||| Sbjct 103221 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 103162 Query 76204 GACAACTACTTTA 76216 || | ||||||| Sbjct 103161 AACCATTACTTTA 103149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||| || ||||| || || |||||| | ||||| ||| ||||| || || | Sbjct 102329 TTTCTTACTGTGTGTACAATTTCTCAAATGTCTTGCCCCAGGAATCTTCCAACCCGGGGC 102270 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| |||||||| |||||||| ||| || || || | ||| || |||| Sbjct 102269 ATTCAGCAGGACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGAT 102210 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC---TTCATTTCCTGTAT 76673 | |||||||||| | ||| |||| ||| || | |||||| ||||| ||| || Sbjct 102209 CCGGTATCCATAAACCAAAGAATAAATCACGA---CAACGTTCCAGTTCATCACCTACAT 102153 Query 76674 TCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 |||| | || ||||| || || | |||||||| |||||||||||| Sbjct 102152 TCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTC 102107 >seq2720 Length=8031 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| | ||| ||||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 5276 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 5217 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| | ||| || | || |||||||| ||| ||||||||||| | |||| | Sbjct 5216 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 5157 Query 76204 GACAACTACTTT 76215 || ||||| || Sbjct 5156 AACCACTACCTT 5145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712754000861760