Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8094 114 9e-21 seq9110 105 5e-18 >seq8094 Length=1710 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||||||||| ||||| ||||| || || || | || || |||| ||| Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || |||||||||||||| ||||| ||||||| || | || ||||| ||| Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078 Query 44249 ATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| || | || | ||||| || | | ||||| |||| ||| || || || Sbjct 1079 ATCTT-TGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTT 1137 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || |||||||| |||||||| Sbjct 1138 ACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 >seq9110 Length=1366 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||||||||| || ||||| || || ||||| | || || |||| ||| Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || ||||||||||| | || |||||||| | || | || ||||| || Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| || |||| | || || || | || ||| ||||||| ||| || || || Sbjct 311 ATCTT-TGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTT 253 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| || ||||| Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359901586205931