Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 114 9e-21
seq9110 105 5e-18
>seq8094
Length=1710
Score = 114 bits (126), Expect = 9e-21
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||||||||| ||||| ||||| || || || | || || |||| |||
Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| || || |||||||||||||| ||||| ||||||| || | || ||||| |||
Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078
Query 44249 ATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| || | || | ||||| || | | ||||| |||| ||| || || ||
Sbjct 1079 ATCTT-TGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTT 1137
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || |||||||| ||||||||
Sbjct 1138 ACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167
>seq9110
Length=1366
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||||||||| || ||||| || || ||||| | || || |||| |||
Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||| || ||||||||||| | || |||||||| | || | || ||||| ||
Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| || |||| | || || || | || ||| ||||||| ||| || || ||
Sbjct 311 ATCTT-TGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTT 253
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| ||||| || |||||
Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359901586205931
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |