Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 152 1e-31
seq8094 122 2e-22
seq3612 100 7e-16
seq18801 95.1 3e-14
>seq9110
Length=1366
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || || ||||| || || || ||||| ||| ||| ||
Sbjct 226 CAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCTGAT 285
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| ||| |||||| || ||||| || || || || ||||| ||||||
Sbjct 286 ACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAGCAA 345
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| |||||||||||| | || || || | || || | |||||||| |
Sbjct 346 CGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATATT 405
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||||||||| || || || || |||
Sbjct 406 CAAAAAGAATCGACGCTTCACCTGGTT 432
>seq8094
Length=1710
Score = 122 bits (134), Expect = 2e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||||||| | || || ||||| || || | || ||||| || ||
Sbjct 1164 CAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGGAT 1105
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| ||| |||||| ||||| || || || || || || || || ||
Sbjct 1104 ACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAACAG 1045
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||| ||||||||||| | || || || | || || | || ||||| ||
Sbjct 1044 CGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAATATC 985
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || ||||| || || || || |||
Sbjct 984 CAGAAGGAATCGACGCTTCACCTGGTT 958
>seq3612
Length=5795
Score = 100 bits (110), Expect = 7e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| ||||||||||| | || || || ||||| ||||| ||||| |||
Sbjct 1507 AAAATGC---AAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAA 1451
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || ||||| || || || |||||||| || || || ||||| ||
Sbjct 1450 TCGTCTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCT 1391
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
||||||||||||||||| || || || ||
Sbjct 1390 GACCAGCAACGACTTATTTTTGCAGGTAA 1362
>seq18801
Length=524
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||||| || || ||||||||||| | || ||||| || ||
Sbjct 410 CAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 351
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||| |||| || ||| || || ||||||||||| ||||| || || || || ||
Sbjct 350 ACCATCAAGAATGTTAAAGCGAAAATGCAGGACAAAGAGGGAATTCCACCAGATCAACAG 291
Query 178044 CGACTTATCTTCGCCGG 178060
|| | |||||| ||||
Sbjct 290 CGCTTGATCTTCTCCGG 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203418996138142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |