Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9110 152 1e-31 seq8094 122 2e-22 seq3612 100 7e-16 seq18801 95.1 3e-14 >seq9110 Length=1366 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || ||||| || || || ||||| ||| ||| || Sbjct 226 CAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCTGAT 285 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| |||||| || ||||| || || || || ||||| |||||| Sbjct 286 ACTATCGAGAACGTTAAAGCAAAGATCCAAGACAAGGAGGGCATTCCACCGGATCAGCAA 345 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| |||||||||||| | || || || | || || | |||||||| | Sbjct 346 CGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATATT 405 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || || || ||| Sbjct 406 CAAAAAGAATCGACGCTTCACCTGGTT 432 >seq8094 Length=1710 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||| | || || ||||| || || | || ||||| || || Sbjct 1164 CAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGGAT 1105 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| |||||| ||||| || || || || || || || || || Sbjct 1104 ACCATCGAAAACGTTAAAGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAACAG 1045 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||||||||| | || || || | || || | || ||||| || Sbjct 1044 CGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATAATATC 985 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || || || ||| Sbjct 984 CAGAAGGAATCGACGCTTCACCTGGTT 958 >seq3612 Length=5795 Score = 100 bits (110), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| | || || || ||||| ||||| ||||| ||| Sbjct 1507 AAAATGC---AAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAA 1451 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||| || || || |||||||| || || || ||||| || Sbjct 1450 TCGTCTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCT 1391 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||||||||||||| || || || || Sbjct 1390 GACCAGCAACGACTTATTTTTGCAGGTAA 1362 >seq18801 Length=524 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||||||||| | || ||||| || || Sbjct 410 CAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 351 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||| |||| || ||| || || ||||||||||| ||||| || || || || || Sbjct 350 ACCATCAAGAATGTTAAAGCGAAAATGCAGGACAAAGAGGGAATTCCACCAGATCAACAG 291 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||| |||| Sbjct 290 CGCTTGATCTTCTCCGG 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203418996138142