Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9110 127 2e-24 seq8094 127 2e-24 >seq9110 Length=1366 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | ||||| || ||||| || || ||||| ||||| || || Sbjct 450 GCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGA 391 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | ||| || ||||| || || || || || || |||| || Sbjct 390 CAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGG 331 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| ||| |||| |||| | | ||| || | || | Sbjct 330 AATGCCCTCCTTGTCTTGGATCTTT-GCTTTAACGTTCTCGATAGTATCAGAGGCTTCTA 272 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||||| ||||| || || || |||||||||||||||||||| Sbjct 271 CCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | ||||| || ||||| |||||||| || |||||||| || Sbjct 940 GCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGA 999 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | || || ||||| || |||| |||||||| || | || Sbjct 1000 CAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGG 1059 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| ||| ||| |||| |||| | | || || | ||||| Sbjct 1060 AATGCCCTCCTTATCCTGGATCTTT-GCTTTAACGTTTTCGATGGTATCCGAAGCCTCCA 1118 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| |||||| ||||||||||| | || || |||||||| ||||| Sbjct 1119 CTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462187019751600