Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 5e-11 seq4 84.2 5e-11 >seq5 Length=16048563 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 7169912 CTAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 7169971 Query 165776 ATGGGC 165781 |||| Sbjct 7169972 GAGGGC 7169977 >seq4 Length=16644688 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 10105078 CTAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 10105137 Query 165776 ATGGGC 165781 |||| Sbjct 10105138 GAGGGC 10105143 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 11862977 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 11862918 Query 165769 CCCC 165772 |||| Sbjct 11862917 CCCC 11862914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814865028620