Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 5e-28
seq136 100 4e-16
seq4 84.2 3e-11
>seq2
Length=28345163
Score = 140 bits (154), Expect = 5e-28
Identities = 171/232 (74%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || |||||||||| || |||||||| ||||| | || | |||||
Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| ||||| |||||||| |||||||| || || ||||| |||||
Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | || || ||||| |||||||| || ||||| |||| || | |||||||||
Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769
|||||||||||||| || | || ||||| | ||| | || || || ||||
Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGCTATT 27365396
>seq136
Length=9508
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| |||| | | ||||||||||| || ||| |||| ||||||| |
Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| |||| || |||||||| |||||||| || || || |||||
Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
||| | ||||||||||| ||
Sbjct 6168 CAACGTCTTATTTTTGCTGG 6187
>seq4
Length=16644688
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||||||||| | || ||| | || ||||| || || || | ||| | ||| |
Sbjct 3142700 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 3142759
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | || |||||||| ||||| || || || |||||||| ||
Sbjct 3142760 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 3142819
Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681
||| | |||||||||||||| ||
Sbjct 3142820 GCAACGACTTATTTTTGCAGGTAA 3142843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755449635283200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |