Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
seq5 95.1 1e-14
seq3 91.5 2e-13
>seq2
Length=28345163
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||| || |||| |||| ||||||||||||| |||||| | ||||||||||| ||||
Sbjct 2598942 AAAAGCTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 2599001
Query 60117 TCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||
Sbjct 2599002 TCACCACTATACTACCGAGGAT 2599023
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 12045270 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12045211
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 12045210 TACTACCGAGGA 12045199
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 12046473 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12046532
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 12046533 TACTACCGAGGA 12046544
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|| ||||||||||| ||||| | ||| || || |||| || | ||| || || || ||
Sbjct 27365437 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 27365496
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| ||||| ||||| || | || | || ||| || ||| ||| |||| | ||| | |
Sbjct 27365497 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATT 27365555
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || || | ||| || || | ||| || |||||||| || || ||||||||
Sbjct 27365556 CTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTAC 27365615
Query 43172 AAAGATTTGCAT 43183
|| || |||||
Sbjct 27365616 GAAAATCTGCAT 27365627
>seq5
Length=16048563
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 11508596 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 11508655
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 11508656 TACTACCGAGGA 11508667
>seq3
Length=25485961
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 16648032 CTCCCCGACCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 16647973
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 16647972 TACTACCGAGGAT 16647960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571812782436720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |