Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 141 8e-29 >seq2 Length=28345163 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||||||||| ||||| ||||||||||| || | || || ||| | || Sbjct 27365628 CATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTC 27365569 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | || ||| | ||| ||| || || ||| | || || || || Sbjct 27365568 GGATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCA 27365509 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || ||||| || || || ||||||||||| ||| | || || |||||||| Sbjct 27365508 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 27365449 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||||||||| ||||| ||||| ||| | || | ||||| Sbjct 27365448 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 27365401 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||||||||||||| ||||||||||| |||| || |||||||| || | || || || Sbjct 27366807 CAAACATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGG 27366748 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 |||| |||| | |||| || ||| || || ||| || |||||||| | ||||| Sbjct 27366747 CGTCAGACACGATTGAAAATGTTAAAGCAAAG-ATACAAGATAAGGAAGGTATTCCGCCG 27366689 Query 31307 GACCAGCAGCGTCTAATATTCGCTGG 31332 || || ||||| || || || ||||| Sbjct 27366688 GATCAACAGCGCCTGATTTTTGCTGG 27366663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762644418080