Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 8e-29
>seq2
Length=28345163
Score = 141 bits (156), Expect = 8e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||||||||| ||||| ||||||||||| || | || || ||| | ||
Sbjct 27365628 CATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTC 27365569
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | || ||| | ||| ||| || || ||| | || || || ||
Sbjct 27365568 GGATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCA 27365509
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || ||||| || || || ||||||||||| ||| | || || ||||||||
Sbjct 27365508 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 27365449
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||||||||| ||||| ||||| ||| | || | |||||
Sbjct 27365448 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 27365401
Score = 86.0 bits (94), Expect = 6e-12
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||||||||||||| ||||||||||| |||| || |||||||| || | || || ||
Sbjct 27366807 CAAACATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGG 27366748
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|||| |||| | |||| || ||| || || ||| || |||||||| | |||||
Sbjct 27366747 CGTCAGACACGATTGAAAATGTTAAAGCAAAG-ATACAAGATAAGGAAGGTATTCCGCCG 27366689
Query 31307 GACCAGCAGCGTCTAATATTCGCTGG 31332
|| || ||||| || || || |||||
Sbjct 27366688 GATCAACAGCGCCTGATTTTTGCTGG 27366663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445762644418080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |