Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 seq2 84.2 2e-11 >seq3 Length=25485961 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| ||||||| | || |||||||| || || || || | |||| ||||||||||| Sbjct 17642581 ATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 17642640 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626 | || ||| ||||||||||||||| ||| || |||||||| | |||| |||| Sbjct 17642641 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTAACC 17642700 Query 37627 AGTATTTTCGT 37637 | || ||| || Sbjct 17642701 ATTACTTTAGT 17642711 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/205 (70%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 37966 AATCCTGGACATTC-GCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTC 38024 || || || ||||| ||| |||||||||| |||||| || ||| | |||||| || Sbjct 17643581 AACCCGGGGCATTCAGCA-GGACACATTAATGACCATATTTTATCGTCACGTACGCGCTC 17643639 Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTG----GTTCTATATTCTT 38080 ||| || | ||| |||| |||||| || |||||||| |||||| || Sbjct 17643640 CATGAAAAGATCCGGTATCCATAAACCAAAGAATAAATCACGACAACGTTCTAG----TT 17643695 Query 38081 CGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140 | | ||||||||||| || | |||||| || || |||||||| ||||||||||| | Sbjct 17643696 CATCACCTACATTCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTCCA 17643755 Query 38141 TATAAATCGACATTGCTCCTGGTCT 38165 |||| | | ||| |||||||| Sbjct 17643756 AGTAAACGGCAAATGCGCCTGGTCT 17643780 >seq2 Length=28345163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| |||||| | || |||||||| || || || || | |||| ||||||||||| Sbjct 24879742 ATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 24879683 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625 | || ||| ||||||||||||||| ||| || |||||||| | ||||||||| Sbjct 24879682 CGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTAAC 24879624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520852678560