Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 87.8 2e-12
seq2 84.2 2e-11
>seq3
Length=25485961
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566
||||| ||||||| | || |||||||| || || || || | |||| |||||||||||
Sbjct 17642581 ATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 17642640
Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626
| || ||| ||||||||||||||| ||| || |||||||| | |||| ||||
Sbjct 17642641 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTAACC 17642700
Query 37627 AGTATTTTCGT 37637
| || ||| ||
Sbjct 17642701 ATTACTTTAGT 17642711
Score = 86.0 bits (94), Expect = 6e-12
Identities = 144/205 (70%), Gaps = 10/205 (5%)
Strand=Plus/Plus
Query 37966 AATCCTGGACATTC-GCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTC 38024
|| || || ||||| ||| |||||||||| |||||| || ||| | |||||| ||
Sbjct 17643581 AACCCGGGGCATTCAGCA-GGACACATTAATGACCATATTTTATCGTCACGTACGCGCTC 17643639
Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTG----GTTCTATATTCTT 38080
||| || | ||| |||| |||||| || |||||||| |||||| ||
Sbjct 17643640 CATGAAAAGATCCGGTATCCATAAACCAAAGAATAAATCACGACAACGTTCTAG----TT 17643695
Query 38081 CGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140
| | ||||||||||| || | |||||| || || |||||||| ||||||||||| |
Sbjct 17643696 CATCACCTACATTCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTCCA 17643755
Query 38141 TATAAATCGACATTGCTCCTGGTCT 38165
|||| | | ||| ||||||||
Sbjct 17643756 AGTAAACGGCAAATGCGCCTGGTCT 17643780
>seq2
Length=28345163
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566
||||| |||||| | || |||||||| || || || || | |||| |||||||||||
Sbjct 24879742 ATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 24879683
Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625
| || ||| ||||||||||||||| ||| || |||||||| | |||||||||
Sbjct 24879682 CGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTAAC 24879624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468520852678560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |